Results 61 - 68 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23032 | 5' | -61.6 | NC_005178.1 | + | 34894 | 0.67 | 0.264338 |
Target: 5'- aGCCcgguggUGGCgGCGCCACG-CCgguugucgCCGGCa -3' miRNA: 3'- gUGG------ACCG-CGCGGUGCaGGa-------GGUCGg -5' |
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23032 | 5' | -61.6 | NC_005178.1 | + | 34979 | 0.67 | 0.250648 |
Target: 5'- cUACUUGGcCGCGCUggccgagGCG-CCgaCCAGCCu -3' miRNA: 3'- -GUGGACC-GCGCGG-------UGCaGGa-GGUCGG- -5' |
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23032 | 5' | -61.6 | NC_005178.1 | + | 35229 | 0.84 | 0.013377 |
Target: 5'- gGCCUGGcCGacaGUgACGUCCUCCAGCCg -3' miRNA: 3'- gUGGACC-GCg--CGgUGCAGGAGGUCGG- -5' |
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23032 | 5' | -61.6 | NC_005178.1 | + | 35415 | 0.69 | 0.178997 |
Target: 5'- gGCCUGGaGCGUCACG-CC-CUGGCUg -3' miRNA: 3'- gUGGACCgCGCGGUGCaGGaGGUCGG- -5' |
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23032 | 5' | -61.6 | NC_005178.1 | + | 35675 | 0.7 | 0.169669 |
Target: 5'- gACCUGGaGCGUCAcCGUCgCcCCAGCUu -3' miRNA: 3'- gUGGACCgCGCGGU-GCAG-GaGGUCGG- -5' |
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23032 | 5' | -61.6 | NC_005178.1 | + | 35773 | 0.67 | 0.244962 |
Target: 5'- -uCCUGGaGCggaccauccGCCAUGUCCUC-GGCCa -3' miRNA: 3'- guGGACCgCG---------CGGUGCAGGAGgUCGG- -5' |
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23032 | 5' | -61.6 | NC_005178.1 | + | 36162 | 0.67 | 0.277934 |
Target: 5'- aACCUGG-GCGgCAUGUaCUCCcagauAGCCg -3' miRNA: 3'- gUGGACCgCGCgGUGCAgGAGG-----UCGG- -5' |
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23032 | 5' | -61.6 | NC_005178.1 | + | 37103 | 0.68 | 0.209755 |
Target: 5'- gACCUGGCGUuCCaucccgACGaCCUCCucGCCg -3' miRNA: 3'- gUGGACCGCGcGG------UGCaGGAGGu-CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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