Results 41 - 60 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23032 | 5' | -61.6 | NC_005178.1 | + | 20399 | 0.66 | 0.314348 |
Target: 5'- uGCCUcGGuCGUGCCu--UCUUCCAGCg -3' miRNA: 3'- gUGGA-CC-GCGCGGugcAGGAGGUCGg -5' |
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23032 | 5' | -61.6 | NC_005178.1 | + | 21974 | 0.72 | 0.119014 |
Target: 5'- gGgUUGGUGagcagcaucuuCGCCACGUCUUCCAGCg -3' miRNA: 3'- gUgGACCGC-----------GCGGUGCAGGAGGUCGg -5' |
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23032 | 5' | -61.6 | NC_005178.1 | + | 22326 | 0.67 | 0.244962 |
Target: 5'- cCGCCUGGCGgGCCAg--CCUggcggUCGGCUu -3' miRNA: 3'- -GUGGACCGCgCGGUgcaGGA-----GGUCGG- -5' |
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23032 | 5' | -61.6 | NC_005178.1 | + | 22345 | 0.66 | 0.299364 |
Target: 5'- gACCUuccGGCGUGCUggcuucGCGUUCaCCAGCg -3' miRNA: 3'- gUGGA---CCGCGCGG------UGCAGGaGGUCGg -5' |
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23032 | 5' | -61.6 | NC_005178.1 | + | 22791 | 0.67 | 0.244962 |
Target: 5'- gACCUGGUcgagcaguacgGCGagGCGUCCauccgCCAGCUg -3' miRNA: 3'- gUGGACCG-----------CGCggUGCAGGa----GGUCGG- -5' |
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23032 | 5' | -61.6 | NC_005178.1 | + | 24499 | 0.73 | 0.095234 |
Target: 5'- gACC-GGCGCGCCg---CCUUCGGCCa -3' miRNA: 3'- gUGGaCCGCGCGGugcaGGAGGUCGG- -5' |
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23032 | 5' | -61.6 | NC_005178.1 | + | 25784 | 0.7 | 0.169669 |
Target: 5'- -uUCaGGCGCGCCugGaggcugucgagcUUCUCCAGCUc -3' miRNA: 3'- guGGaCCGCGCGGugC------------AGGAGGUCGG- -5' |
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23032 | 5' | -61.6 | NC_005178.1 | + | 25927 | 0.67 | 0.251287 |
Target: 5'- aGCCUGGCcaGCgggauGCCACGUggaugguugCCaUCCAGCa -3' miRNA: 3'- gUGGACCG--CG-----CGGUGCA---------GG-AGGUCGg -5' |
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23032 | 5' | -61.6 | NC_005178.1 | + | 26260 | 0.66 | 0.322051 |
Target: 5'- aCGCCaGaGCcaGCGCCACGcCCgcagCGGCCa -3' miRNA: 3'- -GUGGaC-CG--CGCGGUGCaGGag--GUCGG- -5' |
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23032 | 5' | -61.6 | NC_005178.1 | + | 27059 | 0.7 | 0.156491 |
Target: 5'- uCugCUGGcCGCguauuGCCuCGUCCUCCAGgUa -3' miRNA: 3'- -GugGACC-GCG-----CGGuGCAGGAGGUCgG- -5' |
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23032 | 5' | -61.6 | NC_005178.1 | + | 27497 | 0.67 | 0.257745 |
Target: 5'- cCGCCgUGGUggaacuuuugucGCGCaGCG-CCUCCAGCg -3' miRNA: 3'- -GUGG-ACCG------------CGCGgUGCaGGAGGUCGg -5' |
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23032 | 5' | -61.6 | NC_005178.1 | + | 28460 | 0.68 | 0.204329 |
Target: 5'- uCGCUggucGGUGUGCCugGUCCcuggacCUGGCCg -3' miRNA: 3'- -GUGGa---CCGCGCGGugCAGGa-----GGUCGG- -5' |
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23032 | 5' | -61.6 | NC_005178.1 | + | 28848 | 0.67 | 0.244962 |
Target: 5'- aACCUGGUcgaGCGCCuCGUCCaguUCCucaCCg -3' miRNA: 3'- gUGGACCG---CGCGGuGCAGG---AGGuc-GG- -5' |
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23032 | 5' | -61.6 | NC_005178.1 | + | 30488 | 0.66 | 0.306786 |
Target: 5'- aGCUcguUGGCGC-UCGCGUCgaUCAGCCc -3' miRNA: 3'- gUGG---ACCGCGcGGUGCAGgaGGUCGG- -5' |
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23032 | 5' | -61.6 | NC_005178.1 | + | 30595 | 0.75 | 0.062275 |
Target: 5'- aCACCUGGCGCGuguacCCGC-UgCUCCAGCg -3' miRNA: 3'- -GUGGACCGCGC-----GGUGcAgGAGGUCGg -5' |
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23032 | 5' | -61.6 | NC_005178.1 | + | 30790 | 0.69 | 0.188778 |
Target: 5'- cCGCCUGGCaGCgGUCGCGgCCUCgaccugGGCCg -3' miRNA: 3'- -GUGGACCG-CG-CGGUGCaGGAGg-----UCGG- -5' |
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23032 | 5' | -61.6 | NC_005178.1 | + | 30893 | 0.69 | 0.178997 |
Target: 5'- uCACCUcuaccGGCugauGCGCCGCGUagaCgCCGGCCc -3' miRNA: 3'- -GUGGA-----CCG----CGCGGUGCAg--GaGGUCGG- -5' |
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23032 | 5' | -61.6 | NC_005178.1 | + | 31603 | 0.69 | 0.174277 |
Target: 5'- gACCUGGUcCGCCcCGUCCa--GGCCa -3' miRNA: 3'- gUGGACCGcGCGGuGCAGGaggUCGG- -5' |
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23032 | 5' | -61.6 | NC_005178.1 | + | 33907 | 0.66 | 0.306786 |
Target: 5'- gCGCCUGGCGgcgaUGCUcgGCGgCCggugCCGGCUu -3' miRNA: 3'- -GUGGACCGC----GCGG--UGCaGGa---GGUCGG- -5' |
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23032 | 5' | -61.6 | NC_005178.1 | + | 33953 | 0.68 | 0.215304 |
Target: 5'- cCGCCaGGCGCGgcaggacgcCCugGUCCUCUucaCCg -3' miRNA: 3'- -GUGGaCCGCGC---------GGugCAGGAGGuc-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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