miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23032 5' -61.6 NC_005178.1 + 3092 0.67 0.244962
Target:  5'- gCACCagGGCGCcacgcucgGCCugGUCCaggaagcgcUCCAGgCu -3'
miRNA:   3'- -GUGGa-CCGCG--------CGGugCAGG---------AGGUCgG- -5'
23032 5' -61.6 NC_005178.1 + 28848 0.67 0.244962
Target:  5'- aACCUGGUcgaGCGCCuCGUCCaguUCCucaCCg -3'
miRNA:   3'- gUGGACCG---CGCGGuGCAGG---AGGuc-GG- -5'
23032 5' -61.6 NC_005178.1 + 35773 0.67 0.244962
Target:  5'- -uCCUGGaGCggaccauccGCCAUGUCCUC-GGCCa -3'
miRNA:   3'- guGGACCgCG---------CGGUGCAGGAGgUCGG- -5'
23032 5' -61.6 NC_005178.1 + 22791 0.67 0.244962
Target:  5'- gACCUGGUcgagcaguacgGCGagGCGUCCauccgCCAGCUg -3'
miRNA:   3'- gUGGACCG-----------CGCggUGCAGGa----GGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 34979 0.67 0.250648
Target:  5'- cUACUUGGcCGCGCUggccgagGCG-CCgaCCAGCCu -3'
miRNA:   3'- -GUGGACC-GCGCGG-------UGCaGGa-GGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 25927 0.67 0.251287
Target:  5'- aGCCUGGCcaGCgggauGCCACGUggaugguugCCaUCCAGCa -3'
miRNA:   3'- gUGGACCG--CG-----CGGUGCA---------GG-AGGUCGg -5'
23032 5' -61.6 NC_005178.1 + 7737 0.67 0.251287
Target:  5'- gACCUGaagaaGCGCCugGcggUCCUCCAGg- -3'
miRNA:   3'- gUGGACcg---CGCGGugC---AGGAGGUCgg -5'
23032 5' -61.6 NC_005178.1 + 18733 0.67 0.255793
Target:  5'- gACCgggagguacgGGCGCGCCgggauagucaccuuACGgCCUcgcCCAGCCu -3'
miRNA:   3'- gUGGa---------CCGCGCGG--------------UGCaGGA---GGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 27497 0.67 0.257745
Target:  5'- cCGCCgUGGUggaacuuuugucGCGCaGCG-CCUCCAGCg -3'
miRNA:   3'- -GUGG-ACCG------------CGCGgUGCaGGAGGUCGg -5'
23032 5' -61.6 NC_005178.1 + 4707 0.67 0.257745
Target:  5'- -cCCUGGagaaaGCGCUgucGCGUaCCUCCAcguuGCCc -3'
miRNA:   3'- guGGACCg----CGCGG---UGCA-GGAGGU----CGG- -5'
23032 5' -61.6 NC_005178.1 + 3193 0.67 0.263673
Target:  5'- uGCaugGGCagcgcggGCGCUGCGcUUCUCCGGCCc -3'
miRNA:   3'- gUGga-CCG-------CGCGGUGC-AGGAGGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 34894 0.67 0.264338
Target:  5'- aGCCcgguggUGGCgGCGCCACG-CCgguugucgCCGGCa -3'
miRNA:   3'- gUGG------ACCG-CGCGGUGCaGGa-------GGUCGg -5'
23032 5' -61.6 NC_005178.1 + 1755 0.67 0.264338
Target:  5'- aGCCacgcGGC-CGCCACGcacaUCgaCCAGCCa -3'
miRNA:   3'- gUGGa---CCGcGCGGUGC----AGgaGGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 2906 0.67 0.264338
Target:  5'- gACaUGGCGCGCCuCGgCCaggUCgAGCCg -3'
miRNA:   3'- gUGgACCGCGCGGuGCaGG---AGgUCGG- -5'
23032 5' -61.6 NC_005178.1 + 1700 0.67 0.277934
Target:  5'- uGCgUGGCG-GCCGCGUggCUuaCGGCCg -3'
miRNA:   3'- gUGgACCGCgCGGUGCA--GGagGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 36162 0.67 0.277934
Target:  5'- aACCUGG-GCGgCAUGUaCUCCcagauAGCCg -3'
miRNA:   3'- gUGGACCgCGCgGUGCAgGAGG-----UCGG- -5'
23032 5' -61.6 NC_005178.1 + 10636 0.66 0.292082
Target:  5'- aGCC-GGgGCGCaACG-CC-CCGGCCg -3'
miRNA:   3'- gUGGaCCgCGCGgUGCaGGaGGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 22345 0.66 0.299364
Target:  5'- gACCUuccGGCGUGCUggcuucGCGUUCaCCAGCg -3'
miRNA:   3'- gUGGA---CCGCGCGG------UGCAGGaGGUCGg -5'
23032 5' -61.6 NC_005178.1 + 33907 0.66 0.306786
Target:  5'- gCGCCUGGCGgcgaUGCUcgGCGgCCggugCCGGCUu -3'
miRNA:   3'- -GUGGACCGC----GCGG--UGCaGGa---GGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 16339 0.66 0.306786
Target:  5'- -uCCUGG-GCGgCACGcUCa-CCAGCCa -3'
miRNA:   3'- guGGACCgCGCgGUGC-AGgaGGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.