miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23032 5' -61.6 NC_005178.1 + 16410 0.7 0.169669
Target:  5'- aACgaGGUGCGCCAUGaCCUaCUGGCUg -3'
miRNA:   3'- gUGgaCCGCGCGGUGCaGGA-GGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 25784 0.7 0.169669
Target:  5'- -uUCaGGCGCGCCugGaggcugucgagcUUCUCCAGCUc -3'
miRNA:   3'- guGGaCCGCGCGGugC------------AGGAGGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 31603 0.69 0.174277
Target:  5'- gACCUGGUcCGCCcCGUCCa--GGCCa -3'
miRNA:   3'- gUGGACCGcGCGGuGCAGGaggUCGG- -5'
23032 5' -61.6 NC_005178.1 + 35415 0.69 0.178997
Target:  5'- gGCCUGGaGCGUCACG-CC-CUGGCUg -3'
miRNA:   3'- gUGGACCgCGCGGUGCaGGaGGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 30893 0.69 0.178997
Target:  5'- uCACCUcuaccGGCugauGCGCCGCGUagaCgCCGGCCc -3'
miRNA:   3'- -GUGGA-----CCG----CGCGGUGCAg--GaGGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 12032 0.69 0.18383
Target:  5'- gACCUGGCGCcucgGCUugG-CC-CUGGCCc -3'
miRNA:   3'- gUGGACCGCG----CGGugCaGGaGGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 30790 0.69 0.188778
Target:  5'- cCGCCUGGCaGCgGUCGCGgCCUCgaccugGGCCg -3'
miRNA:   3'- -GUGGACCG-CG-CGGUGCaGGAGg-----UCGG- -5'
23032 5' -61.6 NC_005178.1 + 16719 0.68 0.204329
Target:  5'- aGCC-GGCGC-CCugGUCCUCgCAucGCUg -3'
miRNA:   3'- gUGGaCCGCGcGGugCAGGAG-GU--CGG- -5'
23032 5' -61.6 NC_005178.1 + 28460 0.68 0.204329
Target:  5'- uCGCUggucGGUGUGCCugGUCCcuggacCUGGCCg -3'
miRNA:   3'- -GUGGa---CCGCGCGGugCAGGa-----GGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 12666 0.68 0.204329
Target:  5'- gCGCgCUGGCGggugGCCugGUugCCUgCGGCCu -3'
miRNA:   3'- -GUG-GACCGCg---CGGugCA--GGAgGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 37103 0.68 0.209755
Target:  5'- gACCUGGCGUuCCaucccgACGaCCUCCucGCCg -3'
miRNA:   3'- gUGGACCGCGcGG------UGCaGGAGGu-CGG- -5'
23032 5' -61.6 NC_005178.1 + 33953 0.68 0.215304
Target:  5'- cCGCCaGGCGCGgcaggacgcCCugGUCCUCUucaCCg -3'
miRNA:   3'- -GUGGaCCGCGC---------GGugCAGGAGGuc-GG- -5'
23032 5' -61.6 NC_005178.1 + 11154 0.68 0.226195
Target:  5'- -cCCUGGC-CGCCGCccugggcuuccugGUCCUgUGGCCc -3'
miRNA:   3'- guGGACCGcGCGGUG-------------CAGGAgGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 18405 0.68 0.226781
Target:  5'- cCGCCaGGCGCuCCugGaCCUCgCGGUCc -3'
miRNA:   3'- -GUGGaCCGCGcGGugCaGGAG-GUCGG- -5'
23032 5' -61.6 NC_005178.1 + 9967 0.68 0.226781
Target:  5'- aAUCUGGCGCgGCCcuaaGUCCU-UGGCCg -3'
miRNA:   3'- gUGGACCGCG-CGGug--CAGGAgGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 4794 0.68 0.229137
Target:  5'- cCGCCUGGaucgccaaucgccgcCGCGCCuacuACGUCCa--GGCCa -3'
miRNA:   3'- -GUGGACC---------------GCGCGG----UGCAGGaggUCGG- -5'
23032 5' -61.6 NC_005178.1 + 11871 0.68 0.236939
Target:  5'- uCACCagGGCG-GCCAgggUGUCCUgguccaugugcaggCCGGCCu -3'
miRNA:   3'- -GUGGa-CCGCgCGGU---GCAGGA--------------GGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 10942 0.68 0.238771
Target:  5'- gAUCcGGCGCgGCC-CG-CCUCCuGCCc -3'
miRNA:   3'- gUGGaCCGCG-CGGuGCaGGAGGuCGG- -5'
23032 5' -61.6 NC_005178.1 + 14843 0.67 0.243091
Target:  5'- cCGCCUGGCGCaauggauguucuacgGCgCGugugaccCGUCCcuuggcaagcaaggcUCCAGCCg -3'
miRNA:   3'- -GUGGACCGCG---------------CG-GU-------GCAGG---------------AGGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 28848 0.67 0.244962
Target:  5'- aACCUGGUcgaGCGCCuCGUCCaguUCCucaCCg -3'
miRNA:   3'- gUGGACCG---CGCGGuGCAGG---AGGuc-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.