miRNA display CGI


Results 21 - 40 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23032 5' -61.6 NC_005178.1 + 11154 0.68 0.226195
Target:  5'- -cCCUGGC-CGCCGCccugggcuuccugGUCCUgUGGCCc -3'
miRNA:   3'- guGGACCGcGCGGUG-------------CAGGAgGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 11871 0.68 0.236939
Target:  5'- uCACCagGGCG-GCCAgggUGUCCUgguccaugugcaggCCGGCCu -3'
miRNA:   3'- -GUGGa-CCGCgCGGU---GCAGGA--------------GGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 12032 0.69 0.18383
Target:  5'- gACCUGGCGCcucgGCUugG-CC-CUGGCCc -3'
miRNA:   3'- gUGGACCGCG----CGGugCaGGaGGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 12666 0.68 0.204329
Target:  5'- gCGCgCUGGCGggugGCCugGUugCCUgCGGCCu -3'
miRNA:   3'- -GUG-GACCGCg---CGGugCA--GGAgGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 12769 0.71 0.136576
Target:  5'- -cCCUGcGcCGCGCCuACGUCCUcgaCCGGCa -3'
miRNA:   3'- guGGAC-C-GCGCGG-UGCAGGA---GGUCGg -5'
23032 5' -61.6 NC_005178.1 + 12868 0.71 0.129282
Target:  5'- aCGCCgaacaUGGCG-GCCGCGaCCUCCAgggacuGCCg -3'
miRNA:   3'- -GUGG-----ACCGCgCGGUGCaGGAGGU------CGG- -5'
23032 5' -61.6 NC_005178.1 + 12936 0.78 0.040468
Target:  5'- gACgUGGCGCGCCAgGUgCUggCCGGCCu -3'
miRNA:   3'- gUGgACCGCGCGGUgCAgGA--GGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 12990 1.09 0.000135
Target:  5'- gCACCUGGCGCGCCACGUCCUCCAGCCc -3'
miRNA:   3'- -GUGGACCGCGCGGUGCAGGAGGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 13127 0.66 0.322051
Target:  5'- gCGCUUGGaCGCGCUgacCGUCUUguuguaggcaUCGGCCa -3'
miRNA:   3'- -GUGGACC-GCGCGGu--GCAGGA----------GGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 14843 0.67 0.243091
Target:  5'- cCGCCUGGCGCaauggauguucuacgGCgCGugugaccCGUCCcuuggcaagcaaggcUCCAGCCg -3'
miRNA:   3'- -GUGGACCGCG---------------CG-GU-------GCAGG---------------AGGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 16339 0.66 0.306786
Target:  5'- -uCCUGG-GCGgCACGcUCa-CCAGCCa -3'
miRNA:   3'- guGGACCgCGCgGUGC-AGgaGGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 16410 0.7 0.169669
Target:  5'- aACgaGGUGCGCCAUGaCCUaCUGGCUg -3'
miRNA:   3'- gUGgaCCGCGCGGUGCaGGA-GGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 16719 0.68 0.204329
Target:  5'- aGCC-GGCGC-CCugGUCCUCgCAucGCUg -3'
miRNA:   3'- gUGGaCCGCGcGGugCAGGAG-GU--CGG- -5'
23032 5' -61.6 NC_005178.1 + 16845 0.78 0.041654
Target:  5'- aGCCUGGuCGCGCCGC-UCCUggaugugaUCAGCCg -3'
miRNA:   3'- gUGGACC-GCGCGGUGcAGGA--------GGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 18080 0.66 0.314348
Target:  5'- gCAgCUGGCGaaccuGCCGCagcgCCUggcCCAGCCc -3'
miRNA:   3'- -GUgGACCGCg----CGGUGca--GGA---GGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 18405 0.68 0.226781
Target:  5'- cCGCCaGGCGCuCCugGaCCUCgCGGUCc -3'
miRNA:   3'- -GUGGaCCGCGcGGugCaGGAG-GUCGG- -5'
23032 5' -61.6 NC_005178.1 + 18581 0.71 0.140363
Target:  5'- gACCUGgagaaucggguGCGCGCCGCGccCCUUC-GCCg -3'
miRNA:   3'- gUGGAC-----------CGCGCGGUGCa-GGAGGuCGG- -5'
23032 5' -61.6 NC_005178.1 + 18672 0.71 0.124736
Target:  5'- -uCCcGGCGCGCC-CGUaCCUCCcgguccucagaaacGGCCa -3'
miRNA:   3'- guGGaCCGCGCGGuGCA-GGAGG--------------UCGG- -5'
23032 5' -61.6 NC_005178.1 + 18733 0.67 0.255793
Target:  5'- gACCgggagguacgGGCGCGCCgggauagucaccuuACGgCCUcgcCCAGCCu -3'
miRNA:   3'- gUGGa---------CCGCGCGG--------------UGCaGGA---GGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 19887 0.71 0.132883
Target:  5'- -uCCaGGCGCuGCC--GUCCUCCAGCUu -3'
miRNA:   3'- guGGaCCGCG-CGGugCAGGAGGUCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.