miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23032 5' -61.6 NC_005178.1 + 25927 0.67 0.251287
Target:  5'- aGCCUGGCcaGCgggauGCCACGUggaugguugCCaUCCAGCa -3'
miRNA:   3'- gUGGACCG--CG-----CGGUGCA---------GG-AGGUCGg -5'
23032 5' -61.6 NC_005178.1 + 25784 0.7 0.169669
Target:  5'- -uUCaGGCGCGCCugGaggcugucgagcUUCUCCAGCUc -3'
miRNA:   3'- guGGaCCGCGCGGugC------------AGGAGGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 24499 0.73 0.095234
Target:  5'- gACC-GGCGCGCCg---CCUUCGGCCa -3'
miRNA:   3'- gUGGaCCGCGCGGugcaGGAGGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 22791 0.67 0.244962
Target:  5'- gACCUGGUcgagcaguacgGCGagGCGUCCauccgCCAGCUg -3'
miRNA:   3'- gUGGACCG-----------CGCggUGCAGGa----GGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 22345 0.66 0.299364
Target:  5'- gACCUuccGGCGUGCUggcuucGCGUUCaCCAGCg -3'
miRNA:   3'- gUGGA---CCGCGCGG------UGCAGGaGGUCGg -5'
23032 5' -61.6 NC_005178.1 + 22326 0.67 0.244962
Target:  5'- cCGCCUGGCGgGCCAg--CCUggcggUCGGCUu -3'
miRNA:   3'- -GUGGACCGCgCGGUgcaGGA-----GGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 21974 0.72 0.119014
Target:  5'- gGgUUGGUGagcagcaucuuCGCCACGUCUUCCAGCg -3'
miRNA:   3'- gUgGACCGC-----------GCGGUGCAGGAGGUCGg -5'
23032 5' -61.6 NC_005178.1 + 20399 0.66 0.314348
Target:  5'- uGCCUcGGuCGUGCCu--UCUUCCAGCg -3'
miRNA:   3'- gUGGA-CC-GCGCGGugcAGGAGGUCGg -5'
23032 5' -61.6 NC_005178.1 + 19887 0.71 0.132883
Target:  5'- -uCCaGGCGCuGCC--GUCCUCCAGCUu -3'
miRNA:   3'- guGGaCCGCG-CGGugCAGGAGGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 18733 0.67 0.255793
Target:  5'- gACCgggagguacgGGCGCGCCgggauagucaccuuACGgCCUcgcCCAGCCu -3'
miRNA:   3'- gUGGa---------CCGCGCGG--------------UGCaGGA---GGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 18672 0.71 0.124736
Target:  5'- -uCCcGGCGCGCC-CGUaCCUCCcgguccucagaaacGGCCa -3'
miRNA:   3'- guGGaCCGCGCGGuGCA-GGAGG--------------UCGG- -5'
23032 5' -61.6 NC_005178.1 + 18581 0.71 0.140363
Target:  5'- gACCUGgagaaucggguGCGCGCCGCGccCCUUC-GCCg -3'
miRNA:   3'- gUGGAC-----------CGCGCGGUGCa-GGAGGuCGG- -5'
23032 5' -61.6 NC_005178.1 + 18405 0.68 0.226781
Target:  5'- cCGCCaGGCGCuCCugGaCCUCgCGGUCc -3'
miRNA:   3'- -GUGGaCCGCGcGGugCaGGAG-GUCGG- -5'
23032 5' -61.6 NC_005178.1 + 18080 0.66 0.314348
Target:  5'- gCAgCUGGCGaaccuGCCGCagcgCCUggcCCAGCCc -3'
miRNA:   3'- -GUgGACCGCg----CGGUGca--GGA---GGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 16845 0.78 0.041654
Target:  5'- aGCCUGGuCGCGCCGC-UCCUggaugugaUCAGCCg -3'
miRNA:   3'- gUGGACC-GCGCGGUGcAGGA--------GGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 16719 0.68 0.204329
Target:  5'- aGCC-GGCGC-CCugGUCCUCgCAucGCUg -3'
miRNA:   3'- gUGGaCCGCGcGGugCAGGAG-GU--CGG- -5'
23032 5' -61.6 NC_005178.1 + 16410 0.7 0.169669
Target:  5'- aACgaGGUGCGCCAUGaCCUaCUGGCUg -3'
miRNA:   3'- gUGgaCCGCGCGGUGCaGGA-GGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 16339 0.66 0.306786
Target:  5'- -uCCUGG-GCGgCACGcUCa-CCAGCCa -3'
miRNA:   3'- guGGACCgCGCgGUGC-AGgaGGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 14843 0.67 0.243091
Target:  5'- cCGCCUGGCGCaauggauguucuacgGCgCGugugaccCGUCCcuuggcaagcaaggcUCCAGCCg -3'
miRNA:   3'- -GUGGACCGCG---------------CG-GU-------GCAGG---------------AGGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 13127 0.66 0.322051
Target:  5'- gCGCUUGGaCGCGCUgacCGUCUUguuguaggcaUCGGCCa -3'
miRNA:   3'- -GUGGACC-GCGCGGu--GCAGGA----------GGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.