miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23032 5' -61.6 NC_005178.1 + 37103 0.68 0.209755
Target:  5'- gACCUGGCGUuCCaucccgACGaCCUCCucGCCg -3'
miRNA:   3'- gUGGACCGCGcGG------UGCaGGAGGu-CGG- -5'
23032 5' -61.6 NC_005178.1 + 36162 0.67 0.277934
Target:  5'- aACCUGG-GCGgCAUGUaCUCCcagauAGCCg -3'
miRNA:   3'- gUGGACCgCGCgGUGCAgGAGG-----UCGG- -5'
23032 5' -61.6 NC_005178.1 + 35773 0.67 0.244962
Target:  5'- -uCCUGGaGCggaccauccGCCAUGUCCUC-GGCCa -3'
miRNA:   3'- guGGACCgCG---------CGGUGCAGGAGgUCGG- -5'
23032 5' -61.6 NC_005178.1 + 35675 0.7 0.169669
Target:  5'- gACCUGGaGCGUCAcCGUCgCcCCAGCUu -3'
miRNA:   3'- gUGGACCgCGCGGU-GCAG-GaGGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 35415 0.69 0.178997
Target:  5'- gGCCUGGaGCGUCACG-CC-CUGGCUg -3'
miRNA:   3'- gUGGACCgCGCGGUGCaGGaGGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 35229 0.84 0.013377
Target:  5'- gGCCUGGcCGacaGUgACGUCCUCCAGCCg -3'
miRNA:   3'- gUGGACC-GCg--CGgUGCAGGAGGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 34979 0.67 0.250648
Target:  5'- cUACUUGGcCGCGCUggccgagGCG-CCgaCCAGCCu -3'
miRNA:   3'- -GUGGACC-GCGCGG-------UGCaGGa-GGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 34894 0.67 0.264338
Target:  5'- aGCCcgguggUGGCgGCGCCACG-CCgguugucgCCGGCa -3'
miRNA:   3'- gUGG------ACCG-CGCGGUGCaGGa-------GGUCGg -5'
23032 5' -61.6 NC_005178.1 + 33953 0.68 0.215304
Target:  5'- cCGCCaGGCGCGgcaggacgcCCugGUCCUCUucaCCg -3'
miRNA:   3'- -GUGGaCCGCGC---------GGugCAGGAGGuc-GG- -5'
23032 5' -61.6 NC_005178.1 + 33907 0.66 0.306786
Target:  5'- gCGCCUGGCGgcgaUGCUcgGCGgCCggugCCGGCUu -3'
miRNA:   3'- -GUGGACCGC----GCGG--UGCaGGa---GGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 31603 0.69 0.174277
Target:  5'- gACCUGGUcCGCCcCGUCCa--GGCCa -3'
miRNA:   3'- gUGGACCGcGCGGuGCAGGaggUCGG- -5'
23032 5' -61.6 NC_005178.1 + 30893 0.69 0.178997
Target:  5'- uCACCUcuaccGGCugauGCGCCGCGUagaCgCCGGCCc -3'
miRNA:   3'- -GUGGA-----CCG----CGCGGUGCAg--GaGGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 30790 0.69 0.188778
Target:  5'- cCGCCUGGCaGCgGUCGCGgCCUCgaccugGGCCg -3'
miRNA:   3'- -GUGGACCG-CG-CGGUGCaGGAGg-----UCGG- -5'
23032 5' -61.6 NC_005178.1 + 30595 0.75 0.062275
Target:  5'- aCACCUGGCGCGuguacCCGC-UgCUCCAGCg -3'
miRNA:   3'- -GUGGACCGCGC-----GGUGcAgGAGGUCGg -5'
23032 5' -61.6 NC_005178.1 + 30488 0.66 0.306786
Target:  5'- aGCUcguUGGCGC-UCGCGUCgaUCAGCCc -3'
miRNA:   3'- gUGG---ACCGCGcGGUGCAGgaGGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 28848 0.67 0.244962
Target:  5'- aACCUGGUcgaGCGCCuCGUCCaguUCCucaCCg -3'
miRNA:   3'- gUGGACCG---CGCGGuGCAGG---AGGuc-GG- -5'
23032 5' -61.6 NC_005178.1 + 28460 0.68 0.204329
Target:  5'- uCGCUggucGGUGUGCCugGUCCcuggacCUGGCCg -3'
miRNA:   3'- -GUGGa---CCGCGCGGugCAGGa-----GGUCGG- -5'
23032 5' -61.6 NC_005178.1 + 27497 0.67 0.257745
Target:  5'- cCGCCgUGGUggaacuuuugucGCGCaGCG-CCUCCAGCg -3'
miRNA:   3'- -GUGG-ACCG------------CGCGgUGCaGGAGGUCGg -5'
23032 5' -61.6 NC_005178.1 + 27059 0.7 0.156491
Target:  5'- uCugCUGGcCGCguauuGCCuCGUCCUCCAGgUa -3'
miRNA:   3'- -GugGACC-GCG-----CGGuGCAGGAGGUCgG- -5'
23032 5' -61.6 NC_005178.1 + 26260 0.66 0.322051
Target:  5'- aCGCCaGaGCcaGCGCCACGcCCgcagCGGCCa -3'
miRNA:   3'- -GUGGaC-CG--CGCGGUGCaGGag--GUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.