Results 41 - 43 of 43 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23033 | 5' | -58.7 | NC_005178.1 | + | 36066 | 0.66 | 0.429046 |
Target: 5'- gGCCCGCUG-GUGGGCaacGGGUgcgaccacggcuaucUGGGAGUa -3' miRNA: 3'- -UGGGCGGCgUAUCCG---CUCG---------------ACCUUCG- -5' |
|||||||
23033 | 5' | -58.7 | NC_005178.1 | + | 36413 | 0.67 | 0.361055 |
Target: 5'- uCUCGCCGUGgaacgGGGCGAcgauuacggacgGCgGGAAGUa -3' miRNA: 3'- uGGGCGGCGUa----UCCGCU------------CGaCCUUCG- -5' |
|||||||
23033 | 5' | -58.7 | NC_005178.1 | + | 37178 | 0.66 | 0.387701 |
Target: 5'- gACCCGCUGCGccuggAGGCcGAGUUuGAcGCc -3' miRNA: 3'- -UGGGCGGCGUa----UCCG-CUCGAcCUuCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home