Results 41 - 43 of 43 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23033 | 5' | -58.7 | NC_005178.1 | + | 2730 | 0.68 | 0.30398 |
Target: 5'- --aCGCCGCccUGGGCGAGgUGGccaccaAGGCg -3' miRNA: 3'- uggGCGGCGu-AUCCGCUCgACC------UUCG- -5' |
|||||||
23033 | 5' | -58.7 | NC_005178.1 | + | 1736 | 0.66 | 0.406169 |
Target: 5'- uGCUCGCCGaacUGGGCcgccuuGAGCggacccgcgaGGAAGCg -3' miRNA: 3'- -UGGGCGGCgu-AUCCG------CUCGa---------CCUUCG- -5' |
|||||||
23033 | 5' | -58.7 | NC_005178.1 | + | 1392 | 0.69 | 0.247546 |
Target: 5'- gGCCCGCCGCAaAGaCGAucgaacGCUGGAc-- -3' miRNA: 3'- -UGGGCGGCGUaUCcGCU------CGACCUucg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home