miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23034 5' -58.7 NC_005178.1 + 579 0.66 0.4323
Target:  5'- cGGuucCUGGACCGa--CGGCGCCaCCGu -3'
miRNA:   3'- aCCuu-GACCUGGCggaGUUGCGG-GGU- -5'
23034 5' -58.7 NC_005178.1 + 27513 0.66 0.416937
Target:  5'- aGGcugaugcGCUGGGCCGCCgugguggaacuuuugUCGcgcaGCGCCuCCAg -3'
miRNA:   3'- aCCu------UGACCUGGCGG---------------AGU----UGCGG-GGU- -5'
23034 5' -58.7 NC_005178.1 + 12251 0.66 0.412204
Target:  5'- cUGGugucCUGGACCGUCUucaguugugccgcCGACuGCUCCAg -3'
miRNA:   3'- -ACCuu--GACCUGGCGGA-------------GUUG-CGGGGU- -5'
23034 5' -58.7 NC_005178.1 + 22698 0.66 0.40377
Target:  5'- -cGAGCUGGAUCGCCggguCGCUgCCGa -3'
miRNA:   3'- acCUUGACCUGGCGGaguuGCGG-GGU- -5'
23034 5' -58.7 NC_005178.1 + 27163 0.66 0.394528
Target:  5'- cGGGuuagccgcCUGGAUCGCggCAAUGCUCCGg -3'
miRNA:   3'- aCCUu-------GACCUGGCGgaGUUGCGGGGU- -5'
23034 5' -58.7 NC_005178.1 + 34094 0.66 0.39087
Target:  5'- aGGggUUgccaucccacaaacGGuuGCCGCCUCGACGCaaaaucuCCCAc -3'
miRNA:   3'- aCCuuGA--------------CC--UGGCGGAGUUGCG-------GGGU- -5'
23034 5' -58.7 NC_005178.1 + 34853 0.66 0.385424
Target:  5'- -cGGGCUGGAuuCCGCCcgaccgGACGCCUCGg -3'
miRNA:   3'- acCUUGACCU--GGCGGag----UUGCGGGGU- -5'
23034 5' -58.7 NC_005178.1 + 28153 0.67 0.380028
Target:  5'- aGGGGCUgacggucggcgccucGGcuguauCCGCCUCGgccgGCGCCCUg -3'
miRNA:   3'- aCCUUGA---------------CCu-----GGCGGAGU----UGCGGGGu -5'
23034 5' -58.7 NC_005178.1 + 4505 0.67 0.367637
Target:  5'- gUGcGAGCUGG-CCGagcggCAACGCUCCGg -3'
miRNA:   3'- -AC-CUUGACCuGGCgga--GUUGCGGGGU- -5'
23034 5' -58.7 NC_005178.1 + 27083 0.67 0.367637
Target:  5'- gGGAGCUGGACCGgagCAuUGCCgCGa -3'
miRNA:   3'- aCCUUGACCUGGCggaGUuGCGGgGU- -5'
23034 5' -58.7 NC_005178.1 + 30938 0.67 0.358958
Target:  5'- aGGAGCUGGGCaaCGUCgUCAGCaCCCa- -3'
miRNA:   3'- aCCUUGACCUG--GCGG-AGUUGcGGGgu -5'
23034 5' -58.7 NC_005178.1 + 5623 0.67 0.358958
Target:  5'- -uGAAUccgcGGAUCGCCUCGACGUagccgCCCAg -3'
miRNA:   3'- acCUUGa---CCUGGCGGAGUUGCG-----GGGU- -5'
23034 5' -58.7 NC_005178.1 + 18060 0.67 0.350423
Target:  5'- cUGGAGCUGGGCaC-CCUgGGCaGCCgCAu -3'
miRNA:   3'- -ACCUUGACCUG-GcGGAgUUG-CGGgGU- -5'
23034 5' -58.7 NC_005178.1 + 15170 0.68 0.317741
Target:  5'- aGGuACUGGAcagcCCGCCUUggccgAGCGCUUCAc -3'
miRNA:   3'- aCCuUGACCU----GGCGGAG-----UUGCGGGGU- -5'
23034 5' -58.7 NC_005178.1 + 3013 0.68 0.309938
Target:  5'- cUGGAGCgcuuccUGGACCagGCCgagCGugGCGCCCUg -3'
miRNA:   3'- -ACCUUG------ACCUGG--CGGa--GU--UGCGGGGu -5'
23034 5' -58.7 NC_005178.1 + 17918 0.68 0.294771
Target:  5'- aGGcgUuugUGGACCGCUcCAcguCGCCCCAg -3'
miRNA:   3'- aCCuuG---ACCUGGCGGaGUu--GCGGGGU- -5'
23034 5' -58.7 NC_005178.1 + 25808 0.68 0.294771
Target:  5'- aGGAGCaacgGGACCGCCUgcucggcacgucUGACGCCa-- -3'
miRNA:   3'- aCCUUGa---CCUGGCGGA------------GUUGCGGggu -5'
23034 5' -58.7 NC_005178.1 + 9008 0.68 0.294771
Target:  5'- aGGggUUGGACUGCUgcauuUCAcAC-CCCCAg -3'
miRNA:   3'- aCCuuGACCUGGCGG-----AGU-UGcGGGGU- -5'
23034 5' -58.7 NC_005178.1 + 20603 0.69 0.259398
Target:  5'- cUGGAGCUGGGugacaGCUUCAacggGCGCCCa- -3'
miRNA:   3'- -ACCUUGACCUgg---CGGAGU----UGCGGGgu -5'
23034 5' -58.7 NC_005178.1 + 28639 0.7 0.239884
Target:  5'- aGGGAUggcggGGAauGCCggCGACGCCCCc -3'
miRNA:   3'- aCCUUGa----CCUggCGGa-GUUGCGGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.