Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23034 | 5' | -58.7 | NC_005178.1 | + | 579 | 0.66 | 0.4323 |
Target: 5'- cGGuucCUGGACCGa--CGGCGCCaCCGu -3' miRNA: 3'- aCCuu-GACCUGGCggaGUUGCGG-GGU- -5' |
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23034 | 5' | -58.7 | NC_005178.1 | + | 27513 | 0.66 | 0.416937 |
Target: 5'- aGGcugaugcGCUGGGCCGCCgugguggaacuuuugUCGcgcaGCGCCuCCAg -3' miRNA: 3'- aCCu------UGACCUGGCGG---------------AGU----UGCGG-GGU- -5' |
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23034 | 5' | -58.7 | NC_005178.1 | + | 12251 | 0.66 | 0.412204 |
Target: 5'- cUGGugucCUGGACCGUCUucaguugugccgcCGACuGCUCCAg -3' miRNA: 3'- -ACCuu--GACCUGGCGGA-------------GUUG-CGGGGU- -5' |
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23034 | 5' | -58.7 | NC_005178.1 | + | 22698 | 0.66 | 0.40377 |
Target: 5'- -cGAGCUGGAUCGCCggguCGCUgCCGa -3' miRNA: 3'- acCUUGACCUGGCGGaguuGCGG-GGU- -5' |
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23034 | 5' | -58.7 | NC_005178.1 | + | 27163 | 0.66 | 0.394528 |
Target: 5'- cGGGuuagccgcCUGGAUCGCggCAAUGCUCCGg -3' miRNA: 3'- aCCUu-------GACCUGGCGgaGUUGCGGGGU- -5' |
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23034 | 5' | -58.7 | NC_005178.1 | + | 34094 | 0.66 | 0.39087 |
Target: 5'- aGGggUUgccaucccacaaacGGuuGCCGCCUCGACGCaaaaucuCCCAc -3' miRNA: 3'- aCCuuGA--------------CC--UGGCGGAGUUGCG-------GGGU- -5' |
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23034 | 5' | -58.7 | NC_005178.1 | + | 34853 | 0.66 | 0.385424 |
Target: 5'- -cGGGCUGGAuuCCGCCcgaccgGACGCCUCGg -3' miRNA: 3'- acCUUGACCU--GGCGGag----UUGCGGGGU- -5' |
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23034 | 5' | -58.7 | NC_005178.1 | + | 28153 | 0.67 | 0.380028 |
Target: 5'- aGGGGCUgacggucggcgccucGGcuguauCCGCCUCGgccgGCGCCCUg -3' miRNA: 3'- aCCUUGA---------------CCu-----GGCGGAGU----UGCGGGGu -5' |
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23034 | 5' | -58.7 | NC_005178.1 | + | 27083 | 0.67 | 0.367637 |
Target: 5'- gGGAGCUGGACCGgagCAuUGCCgCGa -3' miRNA: 3'- aCCUUGACCUGGCggaGUuGCGGgGU- -5' |
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23034 | 5' | -58.7 | NC_005178.1 | + | 4505 | 0.67 | 0.367637 |
Target: 5'- gUGcGAGCUGG-CCGagcggCAACGCUCCGg -3' miRNA: 3'- -AC-CUUGACCuGGCgga--GUUGCGGGGU- -5' |
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23034 | 5' | -58.7 | NC_005178.1 | + | 5623 | 0.67 | 0.358958 |
Target: 5'- -uGAAUccgcGGAUCGCCUCGACGUagccgCCCAg -3' miRNA: 3'- acCUUGa---CCUGGCGGAGUUGCG-----GGGU- -5' |
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23034 | 5' | -58.7 | NC_005178.1 | + | 30938 | 0.67 | 0.358958 |
Target: 5'- aGGAGCUGGGCaaCGUCgUCAGCaCCCa- -3' miRNA: 3'- aCCUUGACCUG--GCGG-AGUUGcGGGgu -5' |
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23034 | 5' | -58.7 | NC_005178.1 | + | 18060 | 0.67 | 0.350423 |
Target: 5'- cUGGAGCUGGGCaC-CCUgGGCaGCCgCAu -3' miRNA: 3'- -ACCUUGACCUG-GcGGAgUUG-CGGgGU- -5' |
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23034 | 5' | -58.7 | NC_005178.1 | + | 15170 | 0.68 | 0.317741 |
Target: 5'- aGGuACUGGAcagcCCGCCUUggccgAGCGCUUCAc -3' miRNA: 3'- aCCuUGACCU----GGCGGAG-----UUGCGGGGU- -5' |
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23034 | 5' | -58.7 | NC_005178.1 | + | 3013 | 0.68 | 0.309938 |
Target: 5'- cUGGAGCgcuuccUGGACCagGCCgagCGugGCGCCCUg -3' miRNA: 3'- -ACCUUG------ACCUGG--CGGa--GU--UGCGGGGu -5' |
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23034 | 5' | -58.7 | NC_005178.1 | + | 17918 | 0.68 | 0.294771 |
Target: 5'- aGGcgUuugUGGACCGCUcCAcguCGCCCCAg -3' miRNA: 3'- aCCuuG---ACCUGGCGGaGUu--GCGGGGU- -5' |
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23034 | 5' | -58.7 | NC_005178.1 | + | 25808 | 0.68 | 0.294771 |
Target: 5'- aGGAGCaacgGGACCGCCUgcucggcacgucUGACGCCa-- -3' miRNA: 3'- aCCUUGa---CCUGGCGGA------------GUUGCGGggu -5' |
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23034 | 5' | -58.7 | NC_005178.1 | + | 9008 | 0.68 | 0.294771 |
Target: 5'- aGGggUUGGACUGCUgcauuUCAcAC-CCCCAg -3' miRNA: 3'- aCCuuGACCUGGCGG-----AGU-UGcGGGGU- -5' |
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23034 | 5' | -58.7 | NC_005178.1 | + | 20603 | 0.69 | 0.259398 |
Target: 5'- cUGGAGCUGGGugacaGCUUCAacggGCGCCCa- -3' miRNA: 3'- -ACCUUGACCUgg---CGGAGU----UGCGGGgu -5' |
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23034 | 5' | -58.7 | NC_005178.1 | + | 28639 | 0.7 | 0.239884 |
Target: 5'- aGGGAUggcggGGAauGCCggCGACGCCCCc -3' miRNA: 3'- aCCUUGa----CCUggCGGa-GUUGCGGGGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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