miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23035 3' -49.8 NC_005178.1 + 31069 0.66 0.900982
Target:  5'- ------uUCCcgcuCGAUGGCGGUCAgCGu -3'
miRNA:   3'- cauuuauAGGu---GCUACCGCCGGUaGC- -5'
23035 3' -49.8 NC_005178.1 + 31179 0.66 0.893494
Target:  5'- -------aCCACG--GGCGGgCCGUCGg -3'
miRNA:   3'- cauuuauaGGUGCuaCCGCC-GGUAGC- -5'
23035 3' -49.8 NC_005178.1 + 35481 0.66 0.893494
Target:  5'- -----cGUCaggcuguCGGUGGCGGCCAgCGc -3'
miRNA:   3'- cauuuaUAGgu-----GCUACCGCCGGUaGC- -5'
23035 3' -49.8 NC_005178.1 + 33073 0.66 0.869236
Target:  5'- uGUAAAgaucggGUCCGgcgugccgcuCGAUGuaGCGGCUAUCGu -3'
miRNA:   3'- -CAUUUa-----UAGGU----------GCUAC--CGCCGGUAGC- -5'
23035 3' -49.8 NC_005178.1 + 11561 0.66 0.869236
Target:  5'- -cGGAUG-CCGCGA-GGUugaagGGCCAUCa -3'
miRNA:   3'- caUUUAUaGGUGCUaCCG-----CCGGUAGc -5'
23035 3' -49.8 NC_005178.1 + 10240 0.66 0.885703
Target:  5'- -----cGUCCGCGAcaUGGCcGGaCgCAUCGg -3'
miRNA:   3'- cauuuaUAGGUGCU--ACCG-CC-G-GUAGC- -5'
23035 3' -49.8 NC_005178.1 + 28376 0.66 0.869236
Target:  5'- ------cUUCGCgGGUGGCGGCCAg-- -3'
miRNA:   3'- cauuuauAGGUG-CUACCGCCGGUagc -5'
23035 3' -49.8 NC_005178.1 + 4073 0.66 0.869236
Target:  5'- -gGAAU-UCCACGGcgaccaGGUGGCCGUgGg -3'
miRNA:   3'- caUUUAuAGGUGCUa-----CCGCCGGUAgC- -5'
23035 3' -49.8 NC_005178.1 + 25563 0.66 0.877615
Target:  5'- -----cAUCCGCuGGUGGCuGCCcgCGu -3'
miRNA:   3'- cauuuaUAGGUG-CUACCGcCGGuaGC- -5'
23035 3' -49.8 NC_005178.1 + 5723 0.66 0.893494
Target:  5'- gGUGGuGUAUCCcugcuGgGAUGGCuuGCCAUCGg -3'
miRNA:   3'- -CAUU-UAUAGG-----UgCUACCGc-CGGUAGC- -5'
23035 3' -49.8 NC_005178.1 + 4495 0.67 0.823298
Target:  5'- gGgcGGUGguggCUugGGUGGUGGCUgcgGUCGg -3'
miRNA:   3'- -CauUUAUa---GGugCUACCGCCGG---UAGC- -5'
23035 3' -49.8 NC_005178.1 + 21230 0.67 0.860575
Target:  5'- -----cGUCCACGAUguaGGCGGguuUCAUCa -3'
miRNA:   3'- cauuuaUAGGUGCUA---CCGCC---GGUAGc -5'
23035 3' -49.8 NC_005178.1 + 5907 0.67 0.851641
Target:  5'- uGUAGcgG-CCugGcuugagggcguaAUGGCGGCCGUUGc -3'
miRNA:   3'- -CAUUuaUaGGugC------------UACCGCCGGUAGC- -5'
23035 3' -49.8 NC_005178.1 + 6135 0.67 0.832991
Target:  5'- gGUAGGUGUCgAgG--GGCGGCCAccccUCGg -3'
miRNA:   3'- -CAUUUAUAGgUgCuaCCGCCGGU----AGC- -5'
23035 3' -49.8 NC_005178.1 + 11301 0.67 0.851641
Target:  5'- -----aGUCCGCccaGGUGGUGGCCGg-- -3'
miRNA:   3'- cauuuaUAGGUG---CUACCGCCGGUagc -5'
23035 3' -49.8 NC_005178.1 + 31513 0.67 0.832991
Target:  5'- ------uUCCGCGAcGGCGGUCuggCGa -3'
miRNA:   3'- cauuuauAGGUGCUaCCGCCGGua-GC- -5'
23035 3' -49.8 NC_005178.1 + 4730 0.68 0.803232
Target:  5'- gGgcGAUGUUgGCGAUGuCGGCCAUg- -3'
miRNA:   3'- -CauUUAUAGgUGCUACcGCCGGUAgc -5'
23035 3' -49.8 NC_005178.1 + 26307 0.68 0.803232
Target:  5'- ----cUGUCCGCcAUGGCGG-CGUCa -3'
miRNA:   3'- cauuuAUAGGUGcUACCGCCgGUAGc -5'
23035 3' -49.8 NC_005178.1 + 31440 0.68 0.810354
Target:  5'- --uGAUAUCCAgcugcuccaggaacCGcUGGCGGCCGgcUCGc -3'
miRNA:   3'- cauUUAUAGGU--------------GCuACCGCCGGU--AGC- -5'
23035 3' -49.8 NC_005178.1 + 3459 0.68 0.771627
Target:  5'- -cGGAUGUCgAUGAUGGUGGUgAUUu -3'
miRNA:   3'- caUUUAUAGgUGCUACCGCCGgUAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.