Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23035 | 3' | -49.8 | NC_005178.1 | + | 494 | 0.7 | 0.704344 |
Target: 5'- gGUGAAUG-CCagauucacaagcACGGUGGCG-CCGUCGg -3' miRNA: 3'- -CAUUUAUaGG------------UGCUACCGCcGGUAGC- -5' |
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23035 | 3' | -49.8 | NC_005178.1 | + | 3029 | 0.7 | 0.657682 |
Target: 5'- -----cAUCCGCGcucgGGCGGCCG-CGa -3' miRNA: 3'- cauuuaUAGGUGCua--CCGCCGGUaGC- -5' |
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23035 | 3' | -49.8 | NC_005178.1 | + | 3459 | 0.68 | 0.771627 |
Target: 5'- -cGGAUGUCgAUGAUGGUGGUgAUUu -3' miRNA: 3'- caUUUAUAGgUGCUACCGCCGgUAGc -5' |
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23035 | 3' | -49.8 | NC_005178.1 | + | 4073 | 0.66 | 0.869236 |
Target: 5'- -gGAAU-UCCACGGcgaccaGGUGGCCGUgGg -3' miRNA: 3'- caUUUAuAGGUGCUa-----CCGCCGGUAgC- -5' |
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23035 | 3' | -49.8 | NC_005178.1 | + | 4495 | 0.67 | 0.823298 |
Target: 5'- gGgcGGUGguggCUugGGUGGUGGCUgcgGUCGg -3' miRNA: 3'- -CauUUAUa---GGugCUACCGCCGG---UAGC- -5' |
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23035 | 3' | -49.8 | NC_005178.1 | + | 4730 | 0.68 | 0.803232 |
Target: 5'- gGgcGAUGUUgGCGAUGuCGGCCAUg- -3' miRNA: 3'- -CauUUAUAGgUGCUACcGCCGGUAgc -5' |
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23035 | 3' | -49.8 | NC_005178.1 | + | 5334 | 0.69 | 0.738539 |
Target: 5'- -------cCCugaACGGUGGCGGCC-UCGg -3' miRNA: 3'- cauuuauaGG---UGCUACCGCCGGuAGC- -5' |
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23035 | 3' | -49.8 | NC_005178.1 | + | 5723 | 0.66 | 0.893494 |
Target: 5'- gGUGGuGUAUCCcugcuGgGAUGGCuuGCCAUCGg -3' miRNA: 3'- -CAUU-UAUAGG-----UgCUACCGc-CGGUAGC- -5' |
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23035 | 3' | -49.8 | NC_005178.1 | + | 5736 | 0.75 | 0.40139 |
Target: 5'- -cAGAUcgCCGCaucGGUGGCGGCC-UCGg -3' miRNA: 3'- caUUUAuaGGUG---CUACCGCCGGuAGC- -5' |
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23035 | 3' | -49.8 | NC_005178.1 | + | 5907 | 0.67 | 0.851641 |
Target: 5'- uGUAGcgG-CCugGcuugagggcguaAUGGCGGCCGUUGc -3' miRNA: 3'- -CAUUuaUaGGugC------------UACCGCCGGUAGC- -5' |
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23035 | 3' | -49.8 | NC_005178.1 | + | 6135 | 0.67 | 0.832991 |
Target: 5'- gGUAGGUGUCgAgG--GGCGGCCAccccUCGg -3' miRNA: 3'- -CAUUUAUAGgUgCuaCCGCCGGU----AGC- -5' |
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23035 | 3' | -49.8 | NC_005178.1 | + | 6198 | 0.74 | 0.463067 |
Target: 5'- -gGAGUAcaUCCGCGAcaUGGCGaGCCGUgGg -3' miRNA: 3'- caUUUAU--AGGUGCU--ACCGC-CGGUAgC- -5' |
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23035 | 3' | -49.8 | NC_005178.1 | + | 10240 | 0.66 | 0.885703 |
Target: 5'- -----cGUCCGCGAcaUGGCcGGaCgCAUCGg -3' miRNA: 3'- cauuuaUAGGUGCU--ACCG-CC-G-GUAGC- -5' |
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23035 | 3' | -49.8 | NC_005178.1 | + | 11301 | 0.67 | 0.851641 |
Target: 5'- -----aGUCCGCccaGGUGGUGGCCGg-- -3' miRNA: 3'- cauuuaUAGGUG---CUACCGCCGGUagc -5' |
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23035 | 3' | -49.8 | NC_005178.1 | + | 11561 | 0.66 | 0.869236 |
Target: 5'- -cGGAUG-CCGCGA-GGUugaagGGCCAUCa -3' miRNA: 3'- caUUUAUaGGUGCUaCCG-----CCGGUAGc -5' |
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23035 | 3' | -49.8 | NC_005178.1 | + | 11738 | 0.68 | 0.803232 |
Target: 5'- ------uUCgACGGUGcGCaGGCCGUCGa -3' miRNA: 3'- cauuuauAGgUGCUAC-CG-CCGGUAGC- -5' |
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23035 | 3' | -49.8 | NC_005178.1 | + | 12660 | 0.7 | 0.657682 |
Target: 5'- -gGAAUcgGUCCuCGAagcgcuccaGGCGGCCGUCGa -3' miRNA: 3'- caUUUA--UAGGuGCUa--------CCGCCGGUAGC- -5' |
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23035 | 3' | -49.8 | NC_005178.1 | + | 12980 | 0.69 | 0.760744 |
Target: 5'- -------gCCACGAUGGaaGCCAUCc -3' miRNA: 3'- cauuuauaGGUGCUACCgcCGGUAGc -5' |
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23035 | 3' | -49.8 | NC_005178.1 | + | 14629 | 0.7 | 0.669421 |
Target: 5'- -----gGUCCAUGcgGuGCGGCCAUUc -3' miRNA: 3'- cauuuaUAGGUGCuaC-CGCCGGUAGc -5' |
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23035 | 3' | -49.8 | NC_005178.1 | + | 15037 | 0.68 | 0.813374 |
Target: 5'- ----uUGUCCggcaggcgcuuGCgGAUGGCGGCC-UCGa -3' miRNA: 3'- cauuuAUAGG-----------UG-CUACCGCCGGuAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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