Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23035 | 3' | -49.8 | NC_005178.1 | + | 35481 | 0.66 | 0.893494 |
Target: 5'- -----cGUCaggcuguCGGUGGCGGCCAgCGc -3' miRNA: 3'- cauuuaUAGgu-----GCUACCGCCGGUaGC- -5' |
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23035 | 3' | -49.8 | NC_005178.1 | + | 33073 | 0.66 | 0.869236 |
Target: 5'- uGUAAAgaucggGUCCGgcgugccgcuCGAUGuaGCGGCUAUCGu -3' miRNA: 3'- -CAUUUa-----UAGGU----------GCUAC--CGCCGGUAGC- -5' |
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23035 | 3' | -49.8 | NC_005178.1 | + | 31890 | 0.69 | 0.748599 |
Target: 5'- cGUGAccgacGUcgCCGgGAUGGCgcugccggucaucGGCCAUCGc -3' miRNA: 3'- -CAUU-----UAuaGGUgCUACCG-------------CCGGUAGC- -5' |
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23035 | 3' | -49.8 | NC_005178.1 | + | 31513 | 0.67 | 0.832991 |
Target: 5'- ------uUCCGCGAcGGCGGUCuggCGa -3' miRNA: 3'- cauuuauAGGUGCUaCCGCCGGua-GC- -5' |
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23035 | 3' | -49.8 | NC_005178.1 | + | 31440 | 0.68 | 0.810354 |
Target: 5'- --uGAUAUCCAgcugcuccaggaacCGcUGGCGGCCGgcUCGc -3' miRNA: 3'- cauUUAUAGGU--------------GCuACCGCCGGU--AGC- -5' |
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23035 | 3' | -49.8 | NC_005178.1 | + | 31179 | 0.66 | 0.893494 |
Target: 5'- -------aCCACG--GGCGGgCCGUCGg -3' miRNA: 3'- cauuuauaGGUGCuaCCGCC-GGUAGC- -5' |
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23035 | 3' | -49.8 | NC_005178.1 | + | 31069 | 0.66 | 0.900982 |
Target: 5'- ------uUCCcgcuCGAUGGCGGUCAgCGu -3' miRNA: 3'- cauuuauAGGu---GCUACCGCCGGUaGC- -5' |
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23035 | 3' | -49.8 | NC_005178.1 | + | 28376 | 0.66 | 0.869236 |
Target: 5'- ------cUUCGCgGGUGGCGGCCAg-- -3' miRNA: 3'- cauuuauAGGUG-CUACCGCCGGUagc -5' |
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23035 | 3' | -49.8 | NC_005178.1 | + | 26307 | 0.68 | 0.803232 |
Target: 5'- ----cUGUCCGCcAUGGCGG-CGUCa -3' miRNA: 3'- cauuuAUAGGUGcUACCGCCgGUAGc -5' |
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23035 | 3' | -49.8 | NC_005178.1 | + | 25563 | 0.66 | 0.877615 |
Target: 5'- -----cAUCCGCuGGUGGCuGCCcgCGu -3' miRNA: 3'- cauuuaUAGGUG-CUACCGcCGGuaGC- -5' |
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23035 | 3' | -49.8 | NC_005178.1 | + | 24107 | 0.69 | 0.760744 |
Target: 5'- --uGAUGUUgACGGUGGCGGUCuugcCGa -3' miRNA: 3'- cauUUAUAGgUGCUACCGCCGGua--GC- -5' |
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23035 | 3' | -49.8 | NC_005178.1 | + | 21230 | 0.67 | 0.860575 |
Target: 5'- -----cGUCCACGAUguaGGCGGguuUCAUCa -3' miRNA: 3'- cauuuaUAGGUGCUA---CCGCC---GGUAGc -5' |
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23035 | 3' | -49.8 | NC_005178.1 | + | 20856 | 0.7 | 0.657682 |
Target: 5'- -------aCCGCGAgGGCGGCC-UCGu -3' miRNA: 3'- cauuuauaGGUGCUaCCGCCGGuAGC- -5' |
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23035 | 3' | -49.8 | NC_005178.1 | + | 15503 | 1.1 | 0.002075 |
Target: 5'- cGUAAAUAUCCACGAUGGCGGCCAUCGu -3' miRNA: 3'- -CAUUUAUAGGUGCUACCGCCGGUAGC- -5' |
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23035 | 3' | -49.8 | NC_005178.1 | + | 15037 | 0.68 | 0.813374 |
Target: 5'- ----uUGUCCggcaggcgcuuGCgGAUGGCGGCC-UCGa -3' miRNA: 3'- cauuuAUAGG-----------UG-CUACCGCCGGuAGC- -5' |
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23035 | 3' | -49.8 | NC_005178.1 | + | 14629 | 0.7 | 0.669421 |
Target: 5'- -----gGUCCAUGcgGuGCGGCCAUUc -3' miRNA: 3'- cauuuaUAGGUGCuaC-CGCCGGUAGc -5' |
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23035 | 3' | -49.8 | NC_005178.1 | + | 12980 | 0.69 | 0.760744 |
Target: 5'- -------gCCACGAUGGaaGCCAUCc -3' miRNA: 3'- cauuuauaGGUGCUACCgcCGGUAGc -5' |
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23035 | 3' | -49.8 | NC_005178.1 | + | 12660 | 0.7 | 0.657682 |
Target: 5'- -gGAAUcgGUCCuCGAagcgcuccaGGCGGCCGUCGa -3' miRNA: 3'- caUUUA--UAGGuGCUa--------CCGCCGGUAGC- -5' |
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23035 | 3' | -49.8 | NC_005178.1 | + | 11738 | 0.68 | 0.803232 |
Target: 5'- ------uUCgACGGUGcGCaGGCCGUCGa -3' miRNA: 3'- cauuuauAGgUGCUAC-CG-CCGGUAGC- -5' |
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23035 | 3' | -49.8 | NC_005178.1 | + | 11561 | 0.66 | 0.869236 |
Target: 5'- -cGGAUG-CCGCGA-GGUugaagGGCCAUCa -3' miRNA: 3'- caUUUAUaGGUGCUaCCG-----CCGGUAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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