miRNA display CGI


Results 41 - 51 of 51 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23036 3' -59.7 NC_005178.1 + 28680 0.67 0.328456
Target:  5'- aCGGUuCCUGuaucugagcGGCGCCCAuGCUUGGgCGu -3'
miRNA:   3'- -GCCGuGGAC---------CUGCGGGU-CGAACUgGU- -5'
23036 3' -59.7 NC_005178.1 + 29016 0.68 0.290098
Target:  5'- gGGuCACCUGG-CGCaCGGCgaUGGCCGu -3'
miRNA:   3'- gCC-GUGGACCuGCGgGUCGa-ACUGGU- -5'
23036 3' -59.7 NC_005178.1 + 31099 0.69 0.230057
Target:  5'- -cGCACCUGGACGgUCAGCaucgGcACCGa -3'
miRNA:   3'- gcCGUGGACCUGCgGGUCGaa--C-UGGU- -5'
23036 3' -59.7 NC_005178.1 + 32187 0.66 0.344816
Target:  5'- -aGCACCgagcUGGACGCCgAcaccgagcGUUUGGCCAu -3'
miRNA:   3'- gcCGUGG----ACCUGCGGgU--------CGAACUGGU- -5'
23036 3' -59.7 NC_005178.1 + 33043 0.7 0.206919
Target:  5'- gCGGCACCgaGGGCauUCCGGCaggUGGCCAa -3'
miRNA:   3'- -GCCGUGGa-CCUGc-GGGUCGa--ACUGGU- -5'
23036 3' -59.7 NC_005178.1 + 33977 0.67 0.297479
Target:  5'- cCGGCACCaGGcCGCCgAGCaucGCCGc -3'
miRNA:   3'- -GCCGUGGaCCuGCGGgUCGaacUGGU- -5'
23036 3' -59.7 NC_005178.1 + 35044 0.66 0.353213
Target:  5'- uCGGCGCCU---CGgCCAGCgcGGCCAa -3'
miRNA:   3'- -GCCGUGGAccuGCgGGUCGaaCUGGU- -5'
23036 3' -59.7 NC_005178.1 + 35378 0.69 0.218226
Target:  5'- cCGGCugCU-GACGaacaCCAGCgagGGCCAa -3'
miRNA:   3'- -GCCGugGAcCUGCg---GGUCGaa-CUGGU- -5'
23036 3' -59.7 NC_005178.1 + 35418 0.68 0.290098
Target:  5'- cCGG-GCCUGGAgcgucaCGCCCuGGCUguaGACCGu -3'
miRNA:   3'- -GCCgUGGACCU------GCGGG-UCGAa--CUGGU- -5'
23036 3' -59.7 NC_005178.1 + 35477 0.67 0.336564
Target:  5'- aGGCugUcGGugGCggCCAGCgccggGGCCAg -3'
miRNA:   3'- gCCGugGaCCugCG--GGUCGaa---CUGGU- -5'
23036 3' -59.7 NC_005178.1 + 37185 0.74 0.100697
Target:  5'- -uGCGCCUGGAgGCCgAGUUUGACg- -3'
miRNA:   3'- gcCGUGGACCUgCGGgUCGAACUGgu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.