miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23036 3' -59.7 NC_005178.1 + 19890 0.67 0.305006
Target:  5'- gGGCGCCcuaUGGAugUGCCgGGCUggcgGAUCGa -3'
miRNA:   3'- gCCGUGG---ACCU--GCGGgUCGAa---CUGGU- -5'
23036 3' -59.7 NC_005178.1 + 19947 0.67 0.312677
Target:  5'- cCGGCACauccauaGGGCGCCCAuCcaugGGCCAg -3'
miRNA:   3'- -GCCGUGga-----CCUGCGGGUcGaa--CUGGU- -5'
23036 3' -59.7 NC_005178.1 + 20393 0.83 0.022663
Target:  5'- cCGGC-CCUGGACGCCCAGgc-GACCAa -3'
miRNA:   3'- -GCCGuGGACCUGCGGGUCgaaCUGGU- -5'
23036 3' -59.7 NC_005178.1 + 20454 0.72 0.13354
Target:  5'- uGGuCGCCUGGGCGUCCAG---GGCCGg -3'
miRNA:   3'- gCC-GUGGACCUGCGGGUCgaaCUGGU- -5'
23036 3' -59.7 NC_005178.1 + 20490 0.72 0.13732
Target:  5'- gGGCcagGCCgagGGuuuCGCgCAGCUUGGCCAg -3'
miRNA:   3'- gCCG---UGGa--CCu--GCGgGUCGAACUGGU- -5'
23036 3' -59.7 NC_005178.1 + 20525 0.66 0.380151
Target:  5'- cCGGCGaagUGGGCGCCCguugaAGCUgucacccagcuccagGGCCAg -3'
miRNA:   3'- -GCCGUgg-ACCUGCGGG-----UCGAa--------------CUGGU- -5'
23036 3' -59.7 NC_005178.1 + 20682 0.67 0.327653
Target:  5'- aCGGCGCCaaGGACuuGgCCGGCUUGaagagcuaccuggGCCAg -3'
miRNA:   3'- -GCCGUGGa-CCUG--CgGGUCGAAC-------------UGGU- -5'
23036 3' -59.7 NC_005178.1 + 20818 0.69 0.230057
Target:  5'- aGGCACCgaGGuACGCCCGGCgcucuGCUg -3'
miRNA:   3'- gCCGUGGa-CC-UGCGGGUCGaac--UGGu -5'
23036 3' -59.7 NC_005178.1 + 21015 0.67 0.328456
Target:  5'- cCGGCgaagACCUGGACGUuggccgcuaCCGGCacgccgaUGACCu -3'
miRNA:   3'- -GCCG----UGGACCUGCG---------GGUCGa------ACUGGu -5'
23036 3' -59.7 NC_005178.1 + 22317 0.68 0.255342
Target:  5'- gGGCcaGCCUGG-CGgUCGGCUUGGCg- -3'
miRNA:   3'- gCCG--UGGACCuGCgGGUCGAACUGgu -5'
23036 3' -59.7 NC_005178.1 + 22864 0.67 0.312677
Target:  5'- uGGCGgaUGGACGCCUcgccguacuGCUcGACCAg -3'
miRNA:   3'- gCCGUggACCUGCGGGu--------CGAaCUGGU- -5'
23036 3' -59.7 NC_005178.1 + 23112 0.66 0.370437
Target:  5'- cCGGCACCccGGCGCCCA--UUG-CCAa -3'
miRNA:   3'- -GCCGUGGacCUGCGGGUcgAACuGGU- -5'
23036 3' -59.7 NC_005178.1 + 23165 0.67 0.328456
Target:  5'- gGGCGCCgGGGUGCCgGaGCUggucagGGCCAg -3'
miRNA:   3'- gCCGUGGaCCUGCGGgU-CGAa-----CUGGU- -5'
23036 3' -59.7 NC_005178.1 + 23451 0.7 0.18582
Target:  5'- gGGCgacgGCCaGGGCGCCCGGCgcgaaGCCGg -3'
miRNA:   3'- gCCG----UGGaCCUGCGGGUCGaac--UGGU- -5'
23036 3' -59.7 NC_005178.1 + 24155 0.67 0.320494
Target:  5'- aGGUacuccccgccgACCUGGugGCUgGcgaugugauccGCUUGGCCAa -3'
miRNA:   3'- gCCG-----------UGGACCugCGGgU-----------CGAACUGGU- -5'
23036 3' -59.7 NC_005178.1 + 24292 0.67 0.297479
Target:  5'- gGGCGCC-GGGCuGCUCGcGCUgucggugaUGACCAg -3'
miRNA:   3'- gCCGUGGaCCUG-CGGGU-CGA--------ACUGGU- -5'
23036 3' -59.7 NC_005178.1 + 24841 0.77 0.063516
Target:  5'- gCGGCACCUGGAggaaCGCCuCGGCaaUGGCCu -3'
miRNA:   3'- -GCCGUGGACCU----GCGG-GUCGa-ACUGGu -5'
23036 3' -59.7 NC_005178.1 + 25780 0.7 0.212508
Target:  5'- gGcGCGCCUGGAgGCugucgagcuucuCCAGCUcgcgagUGACCGg -3'
miRNA:   3'- gC-CGUGGACCUgCG------------GGUCGA------ACUGGU- -5'
23036 3' -59.7 NC_005178.1 + 26725 0.75 0.084812
Target:  5'- gGGCGCCUGGGacgaaaUGCUCGGCgugGGCCGg -3'
miRNA:   3'- gCCGUGGACCU------GCGGGUCGaa-CUGGU- -5'
23036 3' -59.7 NC_005178.1 + 28133 0.69 0.236173
Target:  5'- uGGCACCgaugGcGGCGCCCAGg--GGCUg -3'
miRNA:   3'- gCCGUGGa---C-CUGCGGGUCgaaCUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.