miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23036 3' -59.7 NC_005178.1 + 22864 0.67 0.312677
Target:  5'- uGGCGgaUGGACGCCUcgccguacuGCUcGACCAg -3'
miRNA:   3'- gCCGUggACCUGCGGGu--------CGAaCUGGU- -5'
23036 3' -59.7 NC_005178.1 + 22317 0.68 0.255342
Target:  5'- gGGCcaGCCUGG-CGgUCGGCUUGGCg- -3'
miRNA:   3'- gCCG--UGGACCuGCgGGUCGAACUGgu -5'
23036 3' -59.7 NC_005178.1 + 21015 0.67 0.328456
Target:  5'- cCGGCgaagACCUGGACGUuggccgcuaCCGGCacgccgaUGACCu -3'
miRNA:   3'- -GCCG----UGGACCUGCG---------GGUCGa------ACUGGu -5'
23036 3' -59.7 NC_005178.1 + 20818 0.69 0.230057
Target:  5'- aGGCACCgaGGuACGCCCGGCgcucuGCUg -3'
miRNA:   3'- gCCGUGGa-CC-UGCGGGUCGaac--UGGu -5'
23036 3' -59.7 NC_005178.1 + 20682 0.67 0.327653
Target:  5'- aCGGCGCCaaGGACuuGgCCGGCUUGaagagcuaccuggGCCAg -3'
miRNA:   3'- -GCCGUGGa-CCUG--CgGGUCGAAC-------------UGGU- -5'
23036 3' -59.7 NC_005178.1 + 20525 0.66 0.380151
Target:  5'- cCGGCGaagUGGGCGCCCguugaAGCUgucacccagcuccagGGCCAg -3'
miRNA:   3'- -GCCGUgg-ACCUGCGGG-----UCGAa--------------CUGGU- -5'
23036 3' -59.7 NC_005178.1 + 20490 0.72 0.13732
Target:  5'- gGGCcagGCCgagGGuuuCGCgCAGCUUGGCCAg -3'
miRNA:   3'- gCCG---UGGa--CCu--GCGgGUCGAACUGGU- -5'
23036 3' -59.7 NC_005178.1 + 20454 0.72 0.13354
Target:  5'- uGGuCGCCUGGGCGUCCAG---GGCCGg -3'
miRNA:   3'- gCC-GUGGACCUGCGGGUCgaaCUGGU- -5'
23036 3' -59.7 NC_005178.1 + 20393 0.83 0.022663
Target:  5'- cCGGC-CCUGGACGCCCAGgc-GACCAa -3'
miRNA:   3'- -GCCGuGGACCUGCGGGUCgaaCUGGU- -5'
23036 3' -59.7 NC_005178.1 + 19947 0.67 0.312677
Target:  5'- cCGGCACauccauaGGGCGCCCAuCcaugGGCCAg -3'
miRNA:   3'- -GCCGUGga-----CCUGCGGGUcGaa--CUGGU- -5'
23036 3' -59.7 NC_005178.1 + 19890 0.67 0.305006
Target:  5'- gGGCGCCcuaUGGAugUGCCgGGCUggcgGAUCGa -3'
miRNA:   3'- gCCGUGG---ACCU--GCGGgUCGAa---CUGGU- -5'
23036 3' -59.7 NC_005178.1 + 18713 0.68 0.290098
Target:  5'- cCGGgauaguCACCUuacGGccuCGCCCAGCcUGACCGc -3'
miRNA:   3'- -GCC------GUGGA---CCu--GCGGGUCGaACUGGU- -5'
23036 3' -59.7 NC_005178.1 + 18400 0.67 0.29525
Target:  5'- aGGCGcuCCUGGACcucgcgguccaccaGCuCCAGCUcgaugcgauUGGCCAu -3'
miRNA:   3'- gCCGU--GGACCUG--------------CG-GGUCGA---------ACUGGU- -5'
23036 3' -59.7 NC_005178.1 + 17997 0.66 0.353213
Target:  5'- gCGGCugCccaGGGUGCCCAGCUccaGGCUg -3'
miRNA:   3'- -GCCGugGa--CCUGCGGGUCGAa--CUGGu -5'
23036 3' -59.7 NC_005178.1 + 17330 0.7 0.206919
Target:  5'- gCGGgGCCgaGGuCGCCCAGCUcGGCa- -3'
miRNA:   3'- -GCCgUGGa-CCuGCGGGUCGAaCUGgu -5'
23036 3' -59.7 NC_005178.1 + 16700 0.67 0.336564
Target:  5'- uGGCAgCgGGAUuCCCAGCUgcuccugGACCc -3'
miRNA:   3'- gCCGUgGaCCUGcGGGUCGAa------CUGGu -5'
23036 3' -59.7 NC_005178.1 + 16662 0.96 0.001891
Target:  5'- cCGGCACCU-GACGCCCAGCUUGACCAg -3'
miRNA:   3'- -GCCGUGGAcCUGCGGGUCGAACUGGU- -5'
23036 3' -59.7 NC_005178.1 + 16333 0.68 0.262009
Target:  5'- aGGCGauCCUGGGCGgcacgcucaCCAGCcaGACCAg -3'
miRNA:   3'- gCCGU--GGACCUGCg--------GGUCGaaCUGGU- -5'
23036 3' -59.7 NC_005178.1 + 15662 0.69 0.230057
Target:  5'- uCGGCcuaGCCUGGAggUGCCCcuGCUcGGCCu -3'
miRNA:   3'- -GCCG---UGGACCU--GCGGGu-CGAaCUGGu -5'
23036 3' -59.7 NC_005178.1 + 15174 0.73 0.122767
Target:  5'- gGGCAgguaCUGGACaGCCCGcCUUGGCCGa -3'
miRNA:   3'- gCCGUg---GACCUG-CGGGUcGAACUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.