miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23036 3' -59.7 NC_005178.1 + 37185 0.74 0.100697
Target:  5'- -uGCGCCUGGAgGCCgAGUUUGACg- -3'
miRNA:   3'- gcCGUGGACCUgCGGgUCGAACUGgu -5'
23036 3' -59.7 NC_005178.1 + 35477 0.67 0.336564
Target:  5'- aGGCugUcGGugGCggCCAGCgccggGGCCAg -3'
miRNA:   3'- gCCGugGaCCugCG--GGUCGaa---CUGGU- -5'
23036 3' -59.7 NC_005178.1 + 35418 0.68 0.290098
Target:  5'- cCGG-GCCUGGAgcgucaCGCCCuGGCUguaGACCGu -3'
miRNA:   3'- -GCCgUGGACCU------GCGGG-UCGAa--CUGGU- -5'
23036 3' -59.7 NC_005178.1 + 35378 0.69 0.218226
Target:  5'- cCGGCugCU-GACGaacaCCAGCgagGGCCAa -3'
miRNA:   3'- -GCCGugGAcCUGCg---GGUCGaa-CUGGU- -5'
23036 3' -59.7 NC_005178.1 + 35044 0.66 0.353213
Target:  5'- uCGGCGCCU---CGgCCAGCgcGGCCAa -3'
miRNA:   3'- -GCCGUGGAccuGCgGGUCGaaCUGGU- -5'
23036 3' -59.7 NC_005178.1 + 33977 0.67 0.297479
Target:  5'- cCGGCACCaGGcCGCCgAGCaucGCCGc -3'
miRNA:   3'- -GCCGUGGaCCuGCGGgUCGaacUGGU- -5'
23036 3' -59.7 NC_005178.1 + 33043 0.7 0.206919
Target:  5'- gCGGCACCgaGGGCauUCCGGCaggUGGCCAa -3'
miRNA:   3'- -GCCGUGGa-CCUGc-GGGUCGa--ACUGGU- -5'
23036 3' -59.7 NC_005178.1 + 32187 0.66 0.344816
Target:  5'- -aGCACCgagcUGGACGCCgAcaccgagcGUUUGGCCAu -3'
miRNA:   3'- gcCGUGG----ACCUGCGGgU--------CGAACUGGU- -5'
23036 3' -59.7 NC_005178.1 + 31099 0.69 0.230057
Target:  5'- -cGCACCUGGACGgUCAGCaucgGcACCGa -3'
miRNA:   3'- gcCGUGGACCUGCgGGUCGaa--C-UGGU- -5'
23036 3' -59.7 NC_005178.1 + 29016 0.68 0.290098
Target:  5'- gGGuCACCUGG-CGCaCGGCgaUGGCCGu -3'
miRNA:   3'- gCC-GUGGACCuGCGgGUCGa-ACUGGU- -5'
23036 3' -59.7 NC_005178.1 + 28680 0.67 0.328456
Target:  5'- aCGGUuCCUGuaucugagcGGCGCCCAuGCUUGGgCGu -3'
miRNA:   3'- -GCCGuGGAC---------CUGCGGGU-CGAACUgGU- -5'
23036 3' -59.7 NC_005178.1 + 28133 0.69 0.236173
Target:  5'- uGGCACCgaugGcGGCGCCCAGg--GGCUg -3'
miRNA:   3'- gCCGUGGa---C-CUGCGGGUCgaaCUGGu -5'
23036 3' -59.7 NC_005178.1 + 26725 0.75 0.084812
Target:  5'- gGGCGCCUGGGacgaaaUGCUCGGCgugGGCCGg -3'
miRNA:   3'- gCCGUGGACCU------GCGGGUCGaa-CUGGU- -5'
23036 3' -59.7 NC_005178.1 + 25780 0.7 0.212508
Target:  5'- gGcGCGCCUGGAgGCugucgagcuucuCCAGCUcgcgagUGACCGg -3'
miRNA:   3'- gC-CGUGGACCUgCG------------GGUCGA------ACUGGU- -5'
23036 3' -59.7 NC_005178.1 + 24841 0.77 0.063516
Target:  5'- gCGGCACCUGGAggaaCGCCuCGGCaaUGGCCu -3'
miRNA:   3'- -GCCGUGGACCU----GCGG-GUCGa-ACUGGu -5'
23036 3' -59.7 NC_005178.1 + 24292 0.67 0.297479
Target:  5'- gGGCGCC-GGGCuGCUCGcGCUgucggugaUGACCAg -3'
miRNA:   3'- gCCGUGGaCCUG-CGGGU-CGA--------ACUGGU- -5'
23036 3' -59.7 NC_005178.1 + 24155 0.67 0.320494
Target:  5'- aGGUacuccccgccgACCUGGugGCUgGcgaugugauccGCUUGGCCAa -3'
miRNA:   3'- gCCG-----------UGGACCugCGGgU-----------CGAACUGGU- -5'
23036 3' -59.7 NC_005178.1 + 23451 0.7 0.18582
Target:  5'- gGGCgacgGCCaGGGCGCCCGGCgcgaaGCCGg -3'
miRNA:   3'- gCCG----UGGaCCUGCGGGUCGaac--UGGU- -5'
23036 3' -59.7 NC_005178.1 + 23165 0.67 0.328456
Target:  5'- gGGCGCCgGGGUGCCgGaGCUggucagGGCCAg -3'
miRNA:   3'- gCCGUGGaCCUGCGGgU-CGAa-----CUGGU- -5'
23036 3' -59.7 NC_005178.1 + 23112 0.66 0.370437
Target:  5'- cCGGCACCccGGCGCCCA--UUG-CCAa -3'
miRNA:   3'- -GCCGUGGacCUGCGGGUcgAACuGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.