miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23036 3' -59.7 NC_005178.1 + 20525 0.66 0.380151
Target:  5'- cCGGCGaagUGGGCGCCCguugaAGCUgucacccagcuccagGGCCAg -3'
miRNA:   3'- -GCCGUgg-ACCUGCGGG-----UCGAa--------------CUGGU- -5'
23036 3' -59.7 NC_005178.1 + 14951 0.66 0.361754
Target:  5'- aGGCGuCCUGGACGU--GGUcgGGCCGc -3'
miRNA:   3'- gCCGU-GGACCUGCGggUCGaaCUGGU- -5'
23036 3' -59.7 NC_005178.1 + 17997 0.66 0.353213
Target:  5'- gCGGCugCccaGGGUGCCCAGCUccaGGCUg -3'
miRNA:   3'- -GCCGugGa--CCUGCGGGUCGAa--CUGGu -5'
23036 3' -59.7 NC_005178.1 + 32187 0.66 0.344816
Target:  5'- -aGCACCgagcUGGACGCCgAcaccgagcGUUUGGCCAu -3'
miRNA:   3'- gcCGUGG----ACCUGCGGgU--------CGAACUGGU- -5'
23036 3' -59.7 NC_005178.1 + 35044 0.66 0.353213
Target:  5'- uCGGCGCCU---CGgCCAGCgcGGCCAa -3'
miRNA:   3'- -GCCGUGGAccuGCgGGUCGaaCUGGU- -5'
23036 3' -59.7 NC_005178.1 + 23112 0.66 0.370437
Target:  5'- cCGGCACCccGGCGCCCA--UUG-CCAa -3'
miRNA:   3'- -GCCGUGGacCUGCGGGUcgAACuGGU- -5'
23036 3' -59.7 NC_005178.1 + 2637 0.66 0.353213
Target:  5'- uCGGCAgcCCUGGAaGCCCGGCcagcuUUGuaggcaugaACCAc -3'
miRNA:   3'- -GCCGU--GGACCUgCGGGUCG-----AAC---------UGGU- -5'
23036 3' -59.7 NC_005178.1 + 28680 0.67 0.328456
Target:  5'- aCGGUuCCUGuaucugagcGGCGCCCAuGCUUGGgCGu -3'
miRNA:   3'- -GCCGuGGAC---------CUGCGGGU-CGAACUgGU- -5'
23036 3' -59.7 NC_005178.1 + 5210 0.67 0.305006
Target:  5'- cCGGCGCCagguugcGGGCGUCCuccagagacacuGGCUgGGCCGg -3'
miRNA:   3'- -GCCGUGGa------CCUGCGGG------------UCGAaCUGGU- -5'
23036 3' -59.7 NC_005178.1 + 35477 0.67 0.336564
Target:  5'- aGGCugUcGGugGCggCCAGCgccggGGCCAg -3'
miRNA:   3'- gCCGugGaCCugCG--GGUCGaa---CUGGU- -5'
23036 3' -59.7 NC_005178.1 + 19947 0.67 0.312677
Target:  5'- cCGGCACauccauaGGGCGCCCAuCcaugGGCCAg -3'
miRNA:   3'- -GCCGUGga-----CCUGCGGGUcGaa--CUGGU- -5'
23036 3' -59.7 NC_005178.1 + 20682 0.67 0.327653
Target:  5'- aCGGCGCCaaGGACuuGgCCGGCUUGaagagcuaccuggGCCAg -3'
miRNA:   3'- -GCCGUGGa-CCUG--CgGGUCGAAC-------------UGGU- -5'
23036 3' -59.7 NC_005178.1 + 33977 0.67 0.297479
Target:  5'- cCGGCACCaGGcCGCCgAGCaucGCCGc -3'
miRNA:   3'- -GCCGUGGaCCuGCGGgUCGaacUGGU- -5'
23036 3' -59.7 NC_005178.1 + 24155 0.67 0.320494
Target:  5'- aGGUacuccccgccgACCUGGugGCUgGcgaugugauccGCUUGGCCAa -3'
miRNA:   3'- gCCG-----------UGGACCugCGGgU-----------CGAACUGGU- -5'
23036 3' -59.7 NC_005178.1 + 19890 0.67 0.305006
Target:  5'- gGGCGCCcuaUGGAugUGCCgGGCUggcgGAUCGa -3'
miRNA:   3'- gCCGUGG---ACCU--GCGGgUCGAa---CUGGU- -5'
23036 3' -59.7 NC_005178.1 + 16700 0.67 0.336564
Target:  5'- uGGCAgCgGGAUuCCCAGCUgcuccugGACCc -3'
miRNA:   3'- gCCGUgGaCCUGcGGGUCGAa------CUGGu -5'
23036 3' -59.7 NC_005178.1 + 21015 0.67 0.328456
Target:  5'- cCGGCgaagACCUGGACGUuggccgcuaCCGGCacgccgaUGACCu -3'
miRNA:   3'- -GCCG----UGGACCUGCG---------GGUCGa------ACUGGu -5'
23036 3' -59.7 NC_005178.1 + 24292 0.67 0.297479
Target:  5'- gGGCGCC-GGGCuGCUCGcGCUgucggugaUGACCAg -3'
miRNA:   3'- gCCGUGGaCCUG-CGGGU-CGA--------ACUGGU- -5'
23036 3' -59.7 NC_005178.1 + 18400 0.67 0.29525
Target:  5'- aGGCGcuCCUGGACcucgcgguccaccaGCuCCAGCUcgaugcgauUGGCCAu -3'
miRNA:   3'- gCCGU--GGACCUG--------------CG-GGUCGA---------ACUGGU- -5'
23036 3' -59.7 NC_005178.1 + 23165 0.67 0.328456
Target:  5'- gGGCGCCgGGGUGCCgGaGCUggucagGGCCAg -3'
miRNA:   3'- gCCGUGGaCCUGCGGgU-CGAa-----CUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.