miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23036 3' -59.7 NC_005178.1 + 2637 0.66 0.353213
Target:  5'- uCGGCAgcCCUGGAaGCCCGGCcagcuUUGuaggcaugaACCAc -3'
miRNA:   3'- -GCCGU--GGACCUgCGGGUCG-----AAC---------UGGU- -5'
23036 3' -59.7 NC_005178.1 + 3095 0.73 0.122767
Target:  5'- uCGGCACCaGGGCGCCaC-GCUcGGCCu -3'
miRNA:   3'- -GCCGUGGaCCUGCGG-GuCGAaCUGGu -5'
23036 3' -59.7 NC_005178.1 + 3167 0.67 0.320494
Target:  5'- -aGCACUggcagGGGCaaauGCCCAGCcugGACCAg -3'
miRNA:   3'- gcCGUGGa----CCUG----CGGGUCGaa-CUGGU- -5'
23036 3' -59.7 NC_005178.1 + 3710 0.69 0.218226
Target:  5'- uCGGCGCCgacaUGGAcCGCCaggccaAGC-UGGCCAc -3'
miRNA:   3'- -GCCGUGG----ACCU-GCGGg-----UCGaACUGGU- -5'
23036 3' -59.7 NC_005178.1 + 3801 0.7 0.212508
Target:  5'- cCGGCGCgUcagcuugaaGGugG-CCAGCUUGGCCu -3'
miRNA:   3'- -GCCGUGgA---------CCugCgGGUCGAACUGGu -5'
23036 3' -59.7 NC_005178.1 + 5210 0.67 0.305006
Target:  5'- cCGGCGCCagguugcGGGCGUCCuccagagacacuGGCUgGGCCGg -3'
miRNA:   3'- -GCCGUGGa------CCUGCGGG------------UCGAaCUGGU- -5'
23036 3' -59.7 NC_005178.1 + 7075 0.68 0.275768
Target:  5'- cCGGC-CCUGGGCGa--GGCggUGACCu -3'
miRNA:   3'- -GCCGuGGACCUGCgggUCGa-ACUGGu -5'
23036 3' -59.7 NC_005178.1 + 10049 0.71 0.18085
Target:  5'- gCGGCACUuuUGGcguCGCCCGGcCUUG-CCGg -3'
miRNA:   3'- -GCCGUGG--ACCu--GCGGGUC-GAACuGGU- -5'
23036 3' -59.7 NC_005178.1 + 11203 0.69 0.248814
Target:  5'- gCGGCgGCCaGGGCGCCCGcGCUgaugUGgauGCCAa -3'
miRNA:   3'- -GCCG-UGGaCCUGCGGGU-CGA----AC---UGGU- -5'
23036 3' -59.7 NC_005178.1 + 12019 0.73 0.112806
Target:  5'- aGGUcuuccgaaugACCUGG-CGCCuCGGCUUGGCCc -3'
miRNA:   3'- gCCG----------UGGACCuGCGG-GUCGAACUGGu -5'
23036 3' -59.7 NC_005178.1 + 14951 0.66 0.361754
Target:  5'- aGGCGuCCUGGACGU--GGUcgGGCCGc -3'
miRNA:   3'- gCCGU-GGACCUGCGggUCGaaCUGGU- -5'
23036 3' -59.7 NC_005178.1 + 15174 0.73 0.122767
Target:  5'- gGGCAgguaCUGGACaGCCCGcCUUGGCCGa -3'
miRNA:   3'- gCCGUg---GACCUG-CGGGUcGAACUGGU- -5'
23036 3' -59.7 NC_005178.1 + 15662 0.69 0.230057
Target:  5'- uCGGCcuaGCCUGGAggUGCCCcuGCUcGGCCu -3'
miRNA:   3'- -GCCG---UGGACCU--GCGGGu-CGAaCUGGu -5'
23036 3' -59.7 NC_005178.1 + 16333 0.68 0.262009
Target:  5'- aGGCGauCCUGGGCGgcacgcucaCCAGCcaGACCAg -3'
miRNA:   3'- gCCGU--GGACCUGCg--------GGUCGaaCUGGU- -5'
23036 3' -59.7 NC_005178.1 + 16662 0.96 0.001891
Target:  5'- cCGGCACCU-GACGCCCAGCUUGACCAg -3'
miRNA:   3'- -GCCGUGGAcCUGCGGGUCGAACUGGU- -5'
23036 3' -59.7 NC_005178.1 + 16700 0.67 0.336564
Target:  5'- uGGCAgCgGGAUuCCCAGCUgcuccugGACCc -3'
miRNA:   3'- gCCGUgGaCCUGcGGGUCGAa------CUGGu -5'
23036 3' -59.7 NC_005178.1 + 17330 0.7 0.206919
Target:  5'- gCGGgGCCgaGGuCGCCCAGCUcGGCa- -3'
miRNA:   3'- -GCCgUGGa-CCuGCGGGUCGAaCUGgu -5'
23036 3' -59.7 NC_005178.1 + 17997 0.66 0.353213
Target:  5'- gCGGCugCccaGGGUGCCCAGCUccaGGCUg -3'
miRNA:   3'- -GCCGugGa--CCUGCGGGUCGAa--CUGGu -5'
23036 3' -59.7 NC_005178.1 + 18400 0.67 0.29525
Target:  5'- aGGCGcuCCUGGACcucgcgguccaccaGCuCCAGCUcgaugcgauUGGCCAu -3'
miRNA:   3'- gCCGU--GGACCUG--------------CG-GGUCGA---------ACUGGU- -5'
23036 3' -59.7 NC_005178.1 + 18713 0.68 0.290098
Target:  5'- cCGGgauaguCACCUuacGGccuCGCCCAGCcUGACCGc -3'
miRNA:   3'- -GCC------GUGGA---CCu--GCGGGUCGaACUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.