Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23036 | 3' | -59.7 | NC_005178.1 | + | 2637 | 0.66 | 0.353213 |
Target: 5'- uCGGCAgcCCUGGAaGCCCGGCcagcuUUGuaggcaugaACCAc -3' miRNA: 3'- -GCCGU--GGACCUgCGGGUCG-----AAC---------UGGU- -5' |
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23036 | 3' | -59.7 | NC_005178.1 | + | 3095 | 0.73 | 0.122767 |
Target: 5'- uCGGCACCaGGGCGCCaC-GCUcGGCCu -3' miRNA: 3'- -GCCGUGGaCCUGCGG-GuCGAaCUGGu -5' |
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23036 | 3' | -59.7 | NC_005178.1 | + | 3167 | 0.67 | 0.320494 |
Target: 5'- -aGCACUggcagGGGCaaauGCCCAGCcugGACCAg -3' miRNA: 3'- gcCGUGGa----CCUG----CGGGUCGaa-CUGGU- -5' |
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23036 | 3' | -59.7 | NC_005178.1 | + | 3710 | 0.69 | 0.218226 |
Target: 5'- uCGGCGCCgacaUGGAcCGCCaggccaAGC-UGGCCAc -3' miRNA: 3'- -GCCGUGG----ACCU-GCGGg-----UCGaACUGGU- -5' |
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23036 | 3' | -59.7 | NC_005178.1 | + | 3801 | 0.7 | 0.212508 |
Target: 5'- cCGGCGCgUcagcuugaaGGugG-CCAGCUUGGCCu -3' miRNA: 3'- -GCCGUGgA---------CCugCgGGUCGAACUGGu -5' |
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23036 | 3' | -59.7 | NC_005178.1 | + | 5210 | 0.67 | 0.305006 |
Target: 5'- cCGGCGCCagguugcGGGCGUCCuccagagacacuGGCUgGGCCGg -3' miRNA: 3'- -GCCGUGGa------CCUGCGGG------------UCGAaCUGGU- -5' |
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23036 | 3' | -59.7 | NC_005178.1 | + | 7075 | 0.68 | 0.275768 |
Target: 5'- cCGGC-CCUGGGCGa--GGCggUGACCu -3' miRNA: 3'- -GCCGuGGACCUGCgggUCGa-ACUGGu -5' |
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23036 | 3' | -59.7 | NC_005178.1 | + | 10049 | 0.71 | 0.18085 |
Target: 5'- gCGGCACUuuUGGcguCGCCCGGcCUUG-CCGg -3' miRNA: 3'- -GCCGUGG--ACCu--GCGGGUC-GAACuGGU- -5' |
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23036 | 3' | -59.7 | NC_005178.1 | + | 11203 | 0.69 | 0.248814 |
Target: 5'- gCGGCgGCCaGGGCGCCCGcGCUgaugUGgauGCCAa -3' miRNA: 3'- -GCCG-UGGaCCUGCGGGU-CGA----AC---UGGU- -5' |
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23036 | 3' | -59.7 | NC_005178.1 | + | 12019 | 0.73 | 0.112806 |
Target: 5'- aGGUcuuccgaaugACCUGG-CGCCuCGGCUUGGCCc -3' miRNA: 3'- gCCG----------UGGACCuGCGG-GUCGAACUGGu -5' |
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23036 | 3' | -59.7 | NC_005178.1 | + | 14951 | 0.66 | 0.361754 |
Target: 5'- aGGCGuCCUGGACGU--GGUcgGGCCGc -3' miRNA: 3'- gCCGU-GGACCUGCGggUCGaaCUGGU- -5' |
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23036 | 3' | -59.7 | NC_005178.1 | + | 15174 | 0.73 | 0.122767 |
Target: 5'- gGGCAgguaCUGGACaGCCCGcCUUGGCCGa -3' miRNA: 3'- gCCGUg---GACCUG-CGGGUcGAACUGGU- -5' |
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23036 | 3' | -59.7 | NC_005178.1 | + | 15662 | 0.69 | 0.230057 |
Target: 5'- uCGGCcuaGCCUGGAggUGCCCcuGCUcGGCCu -3' miRNA: 3'- -GCCG---UGGACCU--GCGGGu-CGAaCUGGu -5' |
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23036 | 3' | -59.7 | NC_005178.1 | + | 16333 | 0.68 | 0.262009 |
Target: 5'- aGGCGauCCUGGGCGgcacgcucaCCAGCcaGACCAg -3' miRNA: 3'- gCCGU--GGACCUGCg--------GGUCGaaCUGGU- -5' |
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23036 | 3' | -59.7 | NC_005178.1 | + | 16662 | 0.96 | 0.001891 |
Target: 5'- cCGGCACCU-GACGCCCAGCUUGACCAg -3' miRNA: 3'- -GCCGUGGAcCUGCGGGUCGAACUGGU- -5' |
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23036 | 3' | -59.7 | NC_005178.1 | + | 16700 | 0.67 | 0.336564 |
Target: 5'- uGGCAgCgGGAUuCCCAGCUgcuccugGACCc -3' miRNA: 3'- gCCGUgGaCCUGcGGGUCGAa------CUGGu -5' |
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23036 | 3' | -59.7 | NC_005178.1 | + | 17330 | 0.7 | 0.206919 |
Target: 5'- gCGGgGCCgaGGuCGCCCAGCUcGGCa- -3' miRNA: 3'- -GCCgUGGa-CCuGCGGGUCGAaCUGgu -5' |
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23036 | 3' | -59.7 | NC_005178.1 | + | 17997 | 0.66 | 0.353213 |
Target: 5'- gCGGCugCccaGGGUGCCCAGCUccaGGCUg -3' miRNA: 3'- -GCCGugGa--CCUGCGGGUCGAa--CUGGu -5' |
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23036 | 3' | -59.7 | NC_005178.1 | + | 18400 | 0.67 | 0.29525 |
Target: 5'- aGGCGcuCCUGGACcucgcgguccaccaGCuCCAGCUcgaugcgauUGGCCAu -3' miRNA: 3'- gCCGU--GGACCUG--------------CG-GGUCGA---------ACUGGU- -5' |
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23036 | 3' | -59.7 | NC_005178.1 | + | 18713 | 0.68 | 0.290098 |
Target: 5'- cCGGgauaguCACCUuacGGccuCGCCCAGCcUGACCGc -3' miRNA: 3'- -GCC------GUGGA---CCu--GCGGGUCGaACUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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