miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23036 3' -59.7 NC_005178.1 + 23112 0.66 0.370437
Target:  5'- cCGGCACCccGGCGCCCA--UUG-CCAa -3'
miRNA:   3'- -GCCGUGGacCUGCGGGUcgAACuGGU- -5'
23036 3' -59.7 NC_005178.1 + 7075 0.68 0.275768
Target:  5'- cCGGC-CCUGGGCGa--GGCggUGACCu -3'
miRNA:   3'- -GCCGuGGACCUGCgggUCGa-ACUGGu -5'
23036 3' -59.7 NC_005178.1 + 19890 0.67 0.305006
Target:  5'- gGGCGCCcuaUGGAugUGCCgGGCUggcgGAUCGa -3'
miRNA:   3'- gCCGUGG---ACCU--GCGGgUCGAa---CUGGU- -5'
23036 3' -59.7 NC_005178.1 + 24155 0.67 0.320494
Target:  5'- aGGUacuccccgccgACCUGGugGCUgGcgaugugauccGCUUGGCCAa -3'
miRNA:   3'- gCCG-----------UGGACCugCGGgU-----------CGAACUGGU- -5'
23036 3' -59.7 NC_005178.1 + 3167 0.67 0.320494
Target:  5'- -aGCACUggcagGGGCaaauGCCCAGCcugGACCAg -3'
miRNA:   3'- gcCGUGGa----CCUG----CGGGUCGaa-CUGGU- -5'
23036 3' -59.7 NC_005178.1 + 20682 0.67 0.327653
Target:  5'- aCGGCGCCaaGGACuuGgCCGGCUUGaagagcuaccuggGCCAg -3'
miRNA:   3'- -GCCGUGGa-CCUG--CgGGUCGAAC-------------UGGU- -5'
23036 3' -59.7 NC_005178.1 + 32187 0.66 0.344816
Target:  5'- -aGCACCgagcUGGACGCCgAcaccgagcGUUUGGCCAu -3'
miRNA:   3'- gcCGUGG----ACCUGCGGgU--------CGAACUGGU- -5'
23036 3' -59.7 NC_005178.1 + 17997 0.66 0.353213
Target:  5'- gCGGCugCccaGGGUGCCCAGCUccaGGCUg -3'
miRNA:   3'- -GCCGugGa--CCUGCGGGUCGAa--CUGGu -5'
23036 3' -59.7 NC_005178.1 + 14951 0.66 0.361754
Target:  5'- aGGCGuCCUGGACGU--GGUcgGGCCGc -3'
miRNA:   3'- gCCGU-GGACCUGCGggUCGaaCUGGU- -5'
23036 3' -59.7 NC_005178.1 + 16333 0.68 0.262009
Target:  5'- aGGCGauCCUGGGCGgcacgcucaCCAGCcaGACCAg -3'
miRNA:   3'- gCCGU--GGACCUGCg--------GGUCGaaCUGGU- -5'
23036 3' -59.7 NC_005178.1 + 28133 0.69 0.236173
Target:  5'- uGGCACCgaugGcGGCGCCCAGg--GGCUg -3'
miRNA:   3'- gCCGUGGa---C-CUGCGGGUCgaaCUGGu -5'
23036 3' -59.7 NC_005178.1 + 31099 0.69 0.230057
Target:  5'- -cGCACCUGGACGgUCAGCaucgGcACCGa -3'
miRNA:   3'- gcCGUGGACCUGCgGGUCGaa--C-UGGU- -5'
23036 3' -59.7 NC_005178.1 + 26725 0.75 0.084812
Target:  5'- gGGCGCCUGGGacgaaaUGCUCGGCgugGGCCGg -3'
miRNA:   3'- gCCGUGGACCU------GCGGGUCGaa-CUGGU- -5'
23036 3' -59.7 NC_005178.1 + 37185 0.74 0.100697
Target:  5'- -uGCGCCUGGAgGCCgAGUUUGACg- -3'
miRNA:   3'- gcCGUGGACCUgCGGgUCGAACUGgu -5'
23036 3' -59.7 NC_005178.1 + 12019 0.73 0.112806
Target:  5'- aGGUcuuccgaaugACCUGG-CGCCuCGGCUUGGCCc -3'
miRNA:   3'- gCCG----------UGGACCuGCGG-GUCGAACUGGu -5'
23036 3' -59.7 NC_005178.1 + 23451 0.7 0.18582
Target:  5'- gGGCgacgGCCaGGGCGCCCGGCgcgaaGCCGg -3'
miRNA:   3'- gCCG----UGGaCCUGCGGGUCGaac--UGGU- -5'
23036 3' -59.7 NC_005178.1 + 33043 0.7 0.206919
Target:  5'- gCGGCACCgaGGGCauUCCGGCaggUGGCCAa -3'
miRNA:   3'- -GCCGUGGa-CCUGc-GGGUCGa--ACUGGU- -5'
23036 3' -59.7 NC_005178.1 + 17330 0.7 0.206919
Target:  5'- gCGGgGCCgaGGuCGCCCAGCUcGGCa- -3'
miRNA:   3'- -GCCgUGGa-CCuGCGGGUCGAaCUGgu -5'
23036 3' -59.7 NC_005178.1 + 35378 0.69 0.218226
Target:  5'- cCGGCugCU-GACGaacaCCAGCgagGGCCAa -3'
miRNA:   3'- -GCCGugGAcCUGCg---GGUCGaa-CUGGU- -5'
23036 3' -59.7 NC_005178.1 + 3710 0.69 0.218226
Target:  5'- uCGGCGCCgacaUGGAcCGCCaggccaAGC-UGGCCAc -3'
miRNA:   3'- -GCCGUGG----ACCU-GCGGg-----UCGaACUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.