miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23036 3' -59.7 NC_005178.1 + 20818 0.69 0.230057
Target:  5'- aGGCACCgaGGuACGCCCGGCgcucuGCUg -3'
miRNA:   3'- gCCGUGGa-CC-UGCGGGUCGaac--UGGu -5'
23036 3' -59.7 NC_005178.1 + 28133 0.69 0.236173
Target:  5'- uGGCACCgaugGcGGCGCCCAGg--GGCUg -3'
miRNA:   3'- gCCGUGGa---C-CUGCGGGUCgaaCUGGu -5'
23036 3' -59.7 NC_005178.1 + 11203 0.69 0.248814
Target:  5'- gCGGCgGCCaGGGCGCCCGcGCUgaugUGgauGCCAa -3'
miRNA:   3'- -GCCG-UGGaCCUGCGGGU-CGA----AC---UGGU- -5'
23036 3' -59.7 NC_005178.1 + 22317 0.68 0.255342
Target:  5'- gGGCcaGCCUGG-CGgUCGGCUUGGCg- -3'
miRNA:   3'- gCCG--UGGACCuGCgGGUCGAACUGgu -5'
23036 3' -59.7 NC_005178.1 + 16333 0.68 0.262009
Target:  5'- aGGCGauCCUGGGCGgcacgcucaCCAGCcaGACCAg -3'
miRNA:   3'- gCCGU--GGACCUGCg--------GGUCGaaCUGGU- -5'
23036 3' -59.7 NC_005178.1 + 7075 0.68 0.275768
Target:  5'- cCGGC-CCUGGGCGa--GGCggUGACCu -3'
miRNA:   3'- -GCCGuGGACCUGCgggUCGa-ACUGGu -5'
23036 3' -59.7 NC_005178.1 + 35418 0.68 0.290098
Target:  5'- cCGG-GCCUGGAgcgucaCGCCCuGGCUguaGACCGu -3'
miRNA:   3'- -GCCgUGGACCU------GCGGG-UCGAa--CUGGU- -5'
23036 3' -59.7 NC_005178.1 + 18713 0.68 0.290098
Target:  5'- cCGGgauaguCACCUuacGGccuCGCCCAGCcUGACCGc -3'
miRNA:   3'- -GCC------GUGGA---CCu--GCGGGUCGaACUGGU- -5'
23036 3' -59.7 NC_005178.1 + 29016 0.68 0.290098
Target:  5'- gGGuCACCUGG-CGCaCGGCgaUGGCCGu -3'
miRNA:   3'- gCC-GUGGACCuGCGgGUCGa-ACUGGU- -5'
23036 3' -59.7 NC_005178.1 + 18400 0.67 0.29525
Target:  5'- aGGCGcuCCUGGACcucgcgguccaccaGCuCCAGCUcgaugcgauUGGCCAu -3'
miRNA:   3'- gCCGU--GGACCUG--------------CG-GGUCGA---------ACUGGU- -5'
23036 3' -59.7 NC_005178.1 + 24292 0.67 0.297479
Target:  5'- gGGCGCC-GGGCuGCUCGcGCUgucggugaUGACCAg -3'
miRNA:   3'- gCCGUGGaCCUG-CGGGU-CGA--------ACUGGU- -5'
23036 3' -59.7 NC_005178.1 + 33977 0.67 0.297479
Target:  5'- cCGGCACCaGGcCGCCgAGCaucGCCGc -3'
miRNA:   3'- -GCCGUGGaCCuGCGGgUCGaacUGGU- -5'
23036 3' -59.7 NC_005178.1 + 5210 0.67 0.305006
Target:  5'- cCGGCGCCagguugcGGGCGUCCuccagagacacuGGCUgGGCCGg -3'
miRNA:   3'- -GCCGUGGa------CCUGCGGG------------UCGAaCUGGU- -5'
23036 3' -59.7 NC_005178.1 + 19890 0.67 0.305006
Target:  5'- gGGCGCCcuaUGGAugUGCCgGGCUggcgGAUCGa -3'
miRNA:   3'- gCCGUGG---ACCU--GCGGgUCGAa---CUGGU- -5'
23036 3' -59.7 NC_005178.1 + 19947 0.67 0.312677
Target:  5'- cCGGCACauccauaGGGCGCCCAuCcaugGGCCAg -3'
miRNA:   3'- -GCCGUGga-----CCUGCGGGUcGaa--CUGGU- -5'
23036 3' -59.7 NC_005178.1 + 22864 0.67 0.312677
Target:  5'- uGGCGgaUGGACGCCUcgccguacuGCUcGACCAg -3'
miRNA:   3'- gCCGUggACCUGCGGGu--------CGAaCUGGU- -5'
23036 3' -59.7 NC_005178.1 + 24155 0.67 0.320494
Target:  5'- aGGUacuccccgccgACCUGGugGCUgGcgaugugauccGCUUGGCCAa -3'
miRNA:   3'- gCCG-----------UGGACCugCGGgU-----------CGAACUGGU- -5'
23036 3' -59.7 NC_005178.1 + 3167 0.67 0.320494
Target:  5'- -aGCACUggcagGGGCaaauGCCCAGCcugGACCAg -3'
miRNA:   3'- gcCGUGGa----CCUG----CGGGUCGaa-CUGGU- -5'
23036 3' -59.7 NC_005178.1 + 20682 0.67 0.327653
Target:  5'- aCGGCGCCaaGGACuuGgCCGGCUUGaagagcuaccuggGCCAg -3'
miRNA:   3'- -GCCGUGGa-CCUG--CgGGUCGAAC-------------UGGU- -5'
23036 3' -59.7 NC_005178.1 + 28680 0.67 0.328456
Target:  5'- aCGGUuCCUGuaucugagcGGCGCCCAuGCUUGGgCGu -3'
miRNA:   3'- -GCCGuGGAC---------CUGCGGGU-CGAACUgGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.