miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23036 3' -59.7 NC_005178.1 + 33977 0.67 0.297479
Target:  5'- cCGGCACCaGGcCGCCgAGCaucGCCGc -3'
miRNA:   3'- -GCCGUGGaCCuGCGGgUCGaacUGGU- -5'
23036 3' -59.7 NC_005178.1 + 18400 0.67 0.29525
Target:  5'- aGGCGcuCCUGGACcucgcgguccaccaGCuCCAGCUcgaugcgauUGGCCAu -3'
miRNA:   3'- gCCGU--GGACCUG--------------CG-GGUCGA---------ACUGGU- -5'
23036 3' -59.7 NC_005178.1 + 18713 0.68 0.290098
Target:  5'- cCGGgauaguCACCUuacGGccuCGCCCAGCcUGACCGc -3'
miRNA:   3'- -GCC------GUGGA---CCu--GCGGGUCGaACUGGU- -5'
23036 3' -59.7 NC_005178.1 + 35418 0.68 0.290098
Target:  5'- cCGG-GCCUGGAgcgucaCGCCCuGGCUguaGACCGu -3'
miRNA:   3'- -GCCgUGGACCU------GCGGG-UCGAa--CUGGU- -5'
23036 3' -59.7 NC_005178.1 + 29016 0.68 0.290098
Target:  5'- gGGuCACCUGG-CGCaCGGCgaUGGCCGu -3'
miRNA:   3'- gCC-GUGGACCuGCGgGUCGa-ACUGGU- -5'
23036 3' -59.7 NC_005178.1 + 7075 0.68 0.275768
Target:  5'- cCGGC-CCUGGGCGa--GGCggUGACCu -3'
miRNA:   3'- -GCCGuGGACCUGCgggUCGa-ACUGGu -5'
23036 3' -59.7 NC_005178.1 + 16333 0.68 0.262009
Target:  5'- aGGCGauCCUGGGCGgcacgcucaCCAGCcaGACCAg -3'
miRNA:   3'- gCCGU--GGACCUGCg--------GGUCGaaCUGGU- -5'
23036 3' -59.7 NC_005178.1 + 22317 0.68 0.255342
Target:  5'- gGGCcaGCCUGG-CGgUCGGCUUGGCg- -3'
miRNA:   3'- gCCG--UGGACCuGCgGGUCGAACUGgu -5'
23036 3' -59.7 NC_005178.1 + 11203 0.69 0.248814
Target:  5'- gCGGCgGCCaGGGCGCCCGcGCUgaugUGgauGCCAa -3'
miRNA:   3'- -GCCG-UGGaCCUGCGGGU-CGA----AC---UGGU- -5'
23036 3' -59.7 NC_005178.1 + 28133 0.69 0.236173
Target:  5'- uGGCACCgaugGcGGCGCCCAGg--GGCUg -3'
miRNA:   3'- gCCGUGGa---C-CUGCGGGUCgaaCUGGu -5'
23036 3' -59.7 NC_005178.1 + 15662 0.69 0.230057
Target:  5'- uCGGCcuaGCCUGGAggUGCCCcuGCUcGGCCu -3'
miRNA:   3'- -GCCG---UGGACCU--GCGGGu-CGAaCUGGu -5'
23036 3' -59.7 NC_005178.1 + 20818 0.69 0.230057
Target:  5'- aGGCACCgaGGuACGCCCGGCgcucuGCUg -3'
miRNA:   3'- gCCGUGGa-CC-UGCGGGUCGaac--UGGu -5'
23036 3' -59.7 NC_005178.1 + 31099 0.69 0.230057
Target:  5'- -cGCACCUGGACGgUCAGCaucgGcACCGa -3'
miRNA:   3'- gcCGUGGACCUGCgGGUCGaa--C-UGGU- -5'
23036 3' -59.7 NC_005178.1 + 3710 0.69 0.218226
Target:  5'- uCGGCGCCgacaUGGAcCGCCaggccaAGC-UGGCCAc -3'
miRNA:   3'- -GCCGUGG----ACCU-GCGGg-----UCGaACUGGU- -5'
23036 3' -59.7 NC_005178.1 + 35378 0.69 0.218226
Target:  5'- cCGGCugCU-GACGaacaCCAGCgagGGCCAa -3'
miRNA:   3'- -GCCGugGAcCUGCg---GGUCGaa-CUGGU- -5'
23036 3' -59.7 NC_005178.1 + 25780 0.7 0.212508
Target:  5'- gGcGCGCCUGGAgGCugucgagcuucuCCAGCUcgcgagUGACCGg -3'
miRNA:   3'- gC-CGUGGACCUgCG------------GGUCGA------ACUGGU- -5'
23036 3' -59.7 NC_005178.1 + 3801 0.7 0.212508
Target:  5'- cCGGCGCgUcagcuugaaGGugG-CCAGCUUGGCCu -3'
miRNA:   3'- -GCCGUGgA---------CCugCgGGUCGAACUGGu -5'
23036 3' -59.7 NC_005178.1 + 33043 0.7 0.206919
Target:  5'- gCGGCACCgaGGGCauUCCGGCaggUGGCCAa -3'
miRNA:   3'- -GCCGUGGa-CCUGc-GGGUCGa--ACUGGU- -5'
23036 3' -59.7 NC_005178.1 + 17330 0.7 0.206919
Target:  5'- gCGGgGCCgaGGuCGCCCAGCUcGGCa- -3'
miRNA:   3'- -GCCgUGGa-CCuGCGGGUCGAaCUGgu -5'
23036 3' -59.7 NC_005178.1 + 23451 0.7 0.18582
Target:  5'- gGGCgacgGCCaGGGCGCCCGGCgcgaaGCCGg -3'
miRNA:   3'- gCCG----UGGaCCUGCGGGUCGaac--UGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.