Results 41 - 51 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23036 | 3' | -59.7 | NC_005178.1 | + | 20525 | 0.66 | 0.380151 |
Target: 5'- cCGGCGaagUGGGCGCCCguugaAGCUgucacccagcuccagGGCCAg -3' miRNA: 3'- -GCCGUgg-ACCUGCGGG-----UCGAa--------------CUGGU- -5' |
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23036 | 3' | -59.7 | NC_005178.1 | + | 23112 | 0.66 | 0.370437 |
Target: 5'- cCGGCACCccGGCGCCCA--UUG-CCAa -3' miRNA: 3'- -GCCGUGGacCUGCGGGUcgAACuGGU- -5' |
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23036 | 3' | -59.7 | NC_005178.1 | + | 17997 | 0.66 | 0.353213 |
Target: 5'- gCGGCugCccaGGGUGCCCAGCUccaGGCUg -3' miRNA: 3'- -GCCGugGa--CCUGCGGGUCGAa--CUGGu -5' |
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23036 | 3' | -59.7 | NC_005178.1 | + | 14951 | 0.66 | 0.361754 |
Target: 5'- aGGCGuCCUGGACGU--GGUcgGGCCGc -3' miRNA: 3'- gCCGU-GGACCUGCGggUCGaaCUGGU- -5' |
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23036 | 3' | -59.7 | NC_005178.1 | + | 32187 | 0.66 | 0.344816 |
Target: 5'- -aGCACCgagcUGGACGCCgAcaccgagcGUUUGGCCAu -3' miRNA: 3'- gcCGUGG----ACCUGCGGgU--------CGAACUGGU- -5' |
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23036 | 3' | -59.7 | NC_005178.1 | + | 20682 | 0.67 | 0.327653 |
Target: 5'- aCGGCGCCaaGGACuuGgCCGGCUUGaagagcuaccuggGCCAg -3' miRNA: 3'- -GCCGUGGa-CCUG--CgGGUCGAAC-------------UGGU- -5' |
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23036 | 3' | -59.7 | NC_005178.1 | + | 3167 | 0.67 | 0.320494 |
Target: 5'- -aGCACUggcagGGGCaaauGCCCAGCcugGACCAg -3' miRNA: 3'- gcCGUGGa----CCUG----CGGGUCGaa-CUGGU- -5' |
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23036 | 3' | -59.7 | NC_005178.1 | + | 24155 | 0.67 | 0.320494 |
Target: 5'- aGGUacuccccgccgACCUGGugGCUgGcgaugugauccGCUUGGCCAa -3' miRNA: 3'- gCCG-----------UGGACCugCGGgU-----------CGAACUGGU- -5' |
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23036 | 3' | -59.7 | NC_005178.1 | + | 19890 | 0.67 | 0.305006 |
Target: 5'- gGGCGCCcuaUGGAugUGCCgGGCUggcgGAUCGa -3' miRNA: 3'- gCCGUGG---ACCU--GCGGgUCGAa---CUGGU- -5' |
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23036 | 3' | -59.7 | NC_005178.1 | + | 7075 | 0.68 | 0.275768 |
Target: 5'- cCGGC-CCUGGGCGa--GGCggUGACCu -3' miRNA: 3'- -GCCGuGGACCUGCgggUCGa-ACUGGu -5' |
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23036 | 3' | -59.7 | NC_005178.1 | + | 20393 | 0.83 | 0.022663 |
Target: 5'- cCGGC-CCUGGACGCCCAGgc-GACCAa -3' miRNA: 3'- -GCCGuGGACCUGCGGGUCgaaCUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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