miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23037 3' -61.8 NC_005178.1 + 1296 0.69 0.154849
Target:  5'- aGCguucgGGCCAGaGCUUcacagggcucaGGUCCAGCGCg -3'
miRNA:   3'- cCGa----CCGGUCgUGGA-----------CCAGGUCGCGa -5'
23037 3' -61.8 NC_005178.1 + 1487 0.67 0.220148
Target:  5'- cGCgGGCCGGCugCggaacaucgaagauGUCCAGCGUUc -3'
miRNA:   3'- cCGaCCGGUCGugGac------------CAGGUCGCGA- -5'
23037 3' -61.8 NC_005178.1 + 2906 0.66 0.250069
Target:  5'- cGGUgcgGGCCAuCAUCaGGUCUAGgGCg -3'
miRNA:   3'- -CCGa--CCGGUcGUGGaCCAGGUCgCGa -5'
23037 3' -61.8 NC_005178.1 + 3086 0.68 0.197509
Target:  5'- gGGC--GCCAcGCucgGCCUGGUCCaggaAGCGCUc -3'
miRNA:   3'- -CCGacCGGU-CG---UGGACCAGG----UCGCGA- -5'
23037 3' -61.8 NC_005178.1 + 3784 0.69 0.177406
Target:  5'- aGgUGGCCAGCuugGCCUggcGGUCCaugucGGCGCc -3'
miRNA:   3'- cCgACCGGUCG---UGGA---CCAGG-----UCGCGa -5'
23037 3' -61.8 NC_005178.1 + 4445 0.72 0.091052
Target:  5'- cGCUcGGCCuGCACUucaagGGUCgCGGCGCUg -3'
miRNA:   3'- cCGA-CCGGuCGUGGa----CCAG-GUCGCGA- -5'
23037 3' -61.8 NC_005178.1 + 5279 0.68 0.20069
Target:  5'- aGGCcgccaccguucagGGCCGGCGCgagCUGGaacuggccgaccUCCAGCGCc -3'
miRNA:   3'- -CCGa------------CCGGUCGUG---GACC------------AGGUCGCGa -5'
23037 3' -61.8 NC_005178.1 + 5406 0.66 0.272748
Target:  5'- gGGCUcggGGCC-GCACCgguguacagcuccaGGUUCAgGCGCUg -3'
miRNA:   3'- -CCGA---CCGGuCGUGGa-------------CCAGGU-CGCGA- -5'
23037 3' -61.8 NC_005178.1 + 6766 0.68 0.192304
Target:  5'- -cCUGGCuCAGCagugaggccGCCcGGUCCAGgCGCUc -3'
miRNA:   3'- ccGACCG-GUCG---------UGGaCCAGGUC-GCGA- -5'
23037 3' -61.8 NC_005178.1 + 7726 0.67 0.213301
Target:  5'- aGCcGGCCgaagaccugaagaAGCGCCUGGcgguccUCCAGgGCg -3'
miRNA:   3'- cCGaCCGG-------------UCGUGGACC------AGGUCgCGa -5'
23037 3' -61.8 NC_005178.1 + 8800 0.68 0.205001
Target:  5'- cGCUGaGCC-GCACCaGGUcggcaagaaagucgcCCGGCGCg -3'
miRNA:   3'- cCGAC-CGGuCGUGGaCCA---------------GGUCGCGa -5'
23037 3' -61.8 NC_005178.1 + 9993 0.75 0.062552
Target:  5'- cGCUGGaguuccaCCAGUACCUGGUCaaucuGGCGCg -3'
miRNA:   3'- cCGACC-------GGUCGUGGACCAGg----UCGCGa -5'
23037 3' -61.8 NC_005178.1 + 10411 0.7 0.146576
Target:  5'- aGCUcGGCCAGCGCa--GcCCGGCGCg -3'
miRNA:   3'- cCGA-CCGGUCGUGgacCaGGUCGCGa -5'
23037 3' -61.8 NC_005178.1 + 11865 0.73 0.078952
Target:  5'- gGGC-GGCCAGgGuguCCUGGUCCAuGUGCa -3'
miRNA:   3'- -CCGaCCGGUCgU---GGACCAGGU-CGCGa -5'
23037 3' -61.8 NC_005178.1 + 12044 0.69 0.172672
Target:  5'- cGGCuUGGCCcuGGCccuguuCCUGGUgaugguugcgaCCAGCGCc -3'
miRNA:   3'- -CCG-ACCGG--UCGu-----GGACCA-----------GGUCGCGa -5'
23037 3' -61.8 NC_005178.1 + 12217 0.67 0.243701
Target:  5'- cGGCUcuuuuCCAGCGCCUGG-CCAaGCGg- -3'
miRNA:   3'- -CCGAcc---GGUCGUGGACCaGGU-CGCga -5'
23037 3' -61.8 NC_005178.1 + 12657 0.67 0.227181
Target:  5'- cGGC-GGCCGGCgcgcuggcgggugGCCUGGuugccugcggccugcUCgCGGCGCg -3'
miRNA:   3'- -CCGaCCGGUCG-------------UGGACC---------------AG-GUCGCGa -5'
23037 3' -61.8 NC_005178.1 + 13000 0.79 0.029396
Target:  5'- aGGCcGGCCAGCACCUGGcgcgccacguccUCCAGCcCa -3'
miRNA:   3'- -CCGaCCGGUCGUGGACC------------AGGUCGcGa -5'
23037 3' -61.8 NC_005178.1 + 13038 0.7 0.138708
Target:  5'- uGCUGGCCAGCcuggccgauGCCUacaacaagacGGUC-AGCGCg -3'
miRNA:   3'- cCGACCGGUCG---------UGGA----------CCAGgUCGCGa -5'
23037 3' -61.8 NC_005178.1 + 13087 0.72 0.099137
Target:  5'- aGGCUGGCCAGCAgCUGcaccuUCaCGGCGg- -3'
miRNA:   3'- -CCGACCGGUCGUgGACc----AG-GUCGCga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.