Results 1 - 20 of 53 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23037 | 3' | -61.8 | NC_005178.1 | + | 25364 | 0.66 | 0.256573 |
Target: 5'- aGGCUGGCCGGgAgCU-GUCCGGUu-- -3' miRNA: 3'- -CCGACCGGUCgUgGAcCAGGUCGcga -5' |
|||||||
23037 | 3' | -61.8 | NC_005178.1 | + | 5279 | 0.68 | 0.20069 |
Target: 5'- aGGCcgccaccguucagGGCCGGCGCgagCUGGaacuggccgaccUCCAGCGCc -3' miRNA: 3'- -CCGa------------CCGGUCGUG---GACC------------AGGUCGCGa -5' |
|||||||
23037 | 3' | -61.8 | NC_005178.1 | + | 8800 | 0.68 | 0.205001 |
Target: 5'- cGCUGaGCC-GCACCaGGUcggcaagaaagucgcCCGGCGCg -3' miRNA: 3'- cCGAC-CGGuCGUGGaCCA---------------GGUCGCGa -5' |
|||||||
23037 | 3' | -61.8 | NC_005178.1 | + | 7726 | 0.67 | 0.213301 |
Target: 5'- aGCcGGCCgaagaccugaagaAGCGCCUGGcgguccUCCAGgGCg -3' miRNA: 3'- cCGaCCGG-------------UCGUGGACC------AGGUCgCGa -5' |
|||||||
23037 | 3' | -61.8 | NC_005178.1 | + | 16801 | 0.67 | 0.21957 |
Target: 5'- uGCUGGCCAGCcuGCC-GGcCCAGgacaUGCa -3' miRNA: 3'- cCGACCGGUCG--UGGaCCaGGUC----GCGa -5' |
|||||||
23037 | 3' | -61.8 | NC_005178.1 | + | 25865 | 0.67 | 0.221889 |
Target: 5'- cGGCaGGUCAGUACCgccaGGccaugcggcaguugCCGGCGCa -3' miRNA: 3'- -CCGaCCGGUCGUGGa---CCa-------------GGUCGCGa -5' |
|||||||
23037 | 3' | -61.8 | NC_005178.1 | + | 12657 | 0.67 | 0.227181 |
Target: 5'- cGGC-GGCCGGCgcgcuggcgggugGCCUGGuugccugcggccugcUCgCGGCGCg -3' miRNA: 3'- -CCGaCCGGUCG-------------UGGACC---------------AG-GUCGCGa -5' |
|||||||
23037 | 3' | -61.8 | NC_005178.1 | + | 31307 | 0.67 | 0.237469 |
Target: 5'- aGCgccgGGCUAuGCGCCUGGcgCC-GCGCc -3' miRNA: 3'- cCGa---CCGGU-CGUGGACCa-GGuCGCGa -5' |
|||||||
23037 | 3' | -61.8 | NC_005178.1 | + | 12217 | 0.67 | 0.243701 |
Target: 5'- cGGCUcuuuuCCAGCGCCUGG-CCAaGCGg- -3' miRNA: 3'- -CCGAcc---GGUCGUGGACCaGGU-CGCga -5' |
|||||||
23037 | 3' | -61.8 | NC_005178.1 | + | 33925 | 0.68 | 0.192304 |
Target: 5'- cGGC-GGCCGGUGCC-GGcuuUCCGGgGCg -3' miRNA: 3'- -CCGaCCGGUCGUGGaCC---AGGUCgCGa -5' |
|||||||
23037 | 3' | -61.8 | NC_005178.1 | + | 35284 | 0.68 | 0.192304 |
Target: 5'- ---cGGCCaAGCAUCUGG-CCGGgGCUc -3' miRNA: 3'- ccgaCCGG-UCGUGGACCaGGUCgCGA- -5' |
|||||||
23037 | 3' | -61.8 | NC_005178.1 | + | 28155 | 0.69 | 0.17314 |
Target: 5'- gGGCUgacGGUCGGCGCCUcGGcuguauccgccucggCCGGCGCc -3' miRNA: 3'- -CCGA---CCGGUCGUGGA-CCa--------------GGUCGCGa -5' |
|||||||
23037 | 3' | -61.8 | NC_005178.1 | + | 16715 | 0.72 | 0.091052 |
Target: 5'- -aCUGaGCCGGCGcCCUGGUCCucgcaucgcuGCGCUg -3' miRNA: 3'- ccGAC-CGGUCGU-GGACCAGGu---------CGCGA- -5' |
|||||||
23037 | 3' | -61.8 | NC_005178.1 | + | 28261 | 0.72 | 0.104603 |
Target: 5'- cGCUGGCCGcCGCCaaUGGUgucaguggggugaCCGGCGCUg -3' miRNA: 3'- cCGACCGGUcGUGG--ACCA-------------GGUCGCGA- -5' |
|||||||
23037 | 3' | -61.8 | NC_005178.1 | + | 13880 | 0.72 | 0.109118 |
Target: 5'- ---aGGCCAGCGCCgcccggcgugaacgGG-CCAGCGCg -3' miRNA: 3'- ccgaCCGGUCGUGGa-------------CCaGGUCGCGa -5' |
|||||||
23037 | 3' | -61.8 | NC_005178.1 | + | 13038 | 0.7 | 0.138708 |
Target: 5'- uGCUGGCCAGCcuggccgauGCCUacaacaagacGGUC-AGCGCg -3' miRNA: 3'- cCGACCGGUCG---------UGGA----------CCAGgUCGCGa -5' |
|||||||
23037 | 3' | -61.8 | NC_005178.1 | + | 13110 | 0.7 | 0.138708 |
Target: 5'- cGCUGGCCAcCGCUaUGGaggugcUCCAGCGCc -3' miRNA: 3'- cCGACCGGUcGUGG-ACC------AGGUCGCGa -5' |
|||||||
23037 | 3' | -61.8 | NC_005178.1 | + | 22945 | 0.69 | 0.154849 |
Target: 5'- cGCUGGcCCAGUGCCUGuGgugCUgaAGCGCg -3' miRNA: 3'- cCGACC-GGUCGUGGAC-Ca--GG--UCGCGa -5' |
|||||||
23037 | 3' | -61.8 | NC_005178.1 | + | 26714 | 0.69 | 0.163542 |
Target: 5'- gGGgUGGCCaagGGCGCCUGGgacgaaaugCuCGGCGUg -3' miRNA: 3'- -CCgACCGG---UCGUGGACCa--------G-GUCGCGa -5' |
|||||||
23037 | 3' | -61.8 | NC_005178.1 | + | 12044 | 0.69 | 0.172672 |
Target: 5'- cGGCuUGGCCcuGGCccuguuCCUGGUgaugguugcgaCCAGCGCc -3' miRNA: 3'- -CCG-ACCGG--UCGu-----GGACCA-----------GGUCGCGa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home