miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23037 3' -61.8 NC_005178.1 + 25364 0.66 0.256573
Target:  5'- aGGCUGGCCGGgAgCU-GUCCGGUu-- -3'
miRNA:   3'- -CCGACCGGUCgUgGAcCAGGUCGcga -5'
23037 3' -61.8 NC_005178.1 + 5279 0.68 0.20069
Target:  5'- aGGCcgccaccguucagGGCCGGCGCgagCUGGaacuggccgaccUCCAGCGCc -3'
miRNA:   3'- -CCGa------------CCGGUCGUG---GACC------------AGGUCGCGa -5'
23037 3' -61.8 NC_005178.1 + 8800 0.68 0.205001
Target:  5'- cGCUGaGCC-GCACCaGGUcggcaagaaagucgcCCGGCGCg -3'
miRNA:   3'- cCGAC-CGGuCGUGGaCCA---------------GGUCGCGa -5'
23037 3' -61.8 NC_005178.1 + 7726 0.67 0.213301
Target:  5'- aGCcGGCCgaagaccugaagaAGCGCCUGGcgguccUCCAGgGCg -3'
miRNA:   3'- cCGaCCGG-------------UCGUGGACC------AGGUCgCGa -5'
23037 3' -61.8 NC_005178.1 + 16801 0.67 0.21957
Target:  5'- uGCUGGCCAGCcuGCC-GGcCCAGgacaUGCa -3'
miRNA:   3'- cCGACCGGUCG--UGGaCCaGGUC----GCGa -5'
23037 3' -61.8 NC_005178.1 + 25865 0.67 0.221889
Target:  5'- cGGCaGGUCAGUACCgccaGGccaugcggcaguugCCGGCGCa -3'
miRNA:   3'- -CCGaCCGGUCGUGGa---CCa-------------GGUCGCGa -5'
23037 3' -61.8 NC_005178.1 + 12657 0.67 0.227181
Target:  5'- cGGC-GGCCGGCgcgcuggcgggugGCCUGGuugccugcggccugcUCgCGGCGCg -3'
miRNA:   3'- -CCGaCCGGUCG-------------UGGACC---------------AG-GUCGCGa -5'
23037 3' -61.8 NC_005178.1 + 31307 0.67 0.237469
Target:  5'- aGCgccgGGCUAuGCGCCUGGcgCC-GCGCc -3'
miRNA:   3'- cCGa---CCGGU-CGUGGACCa-GGuCGCGa -5'
23037 3' -61.8 NC_005178.1 + 12217 0.67 0.243701
Target:  5'- cGGCUcuuuuCCAGCGCCUGG-CCAaGCGg- -3'
miRNA:   3'- -CCGAcc---GGUCGUGGACCaGGU-CGCga -5'
23037 3' -61.8 NC_005178.1 + 33925 0.68 0.192304
Target:  5'- cGGC-GGCCGGUGCC-GGcuuUCCGGgGCg -3'
miRNA:   3'- -CCGaCCGGUCGUGGaCC---AGGUCgCGa -5'
23037 3' -61.8 NC_005178.1 + 35284 0.68 0.192304
Target:  5'- ---cGGCCaAGCAUCUGG-CCGGgGCUc -3'
miRNA:   3'- ccgaCCGG-UCGUGGACCaGGUCgCGA- -5'
23037 3' -61.8 NC_005178.1 + 28155 0.69 0.17314
Target:  5'- gGGCUgacGGUCGGCGCCUcGGcuguauccgccucggCCGGCGCc -3'
miRNA:   3'- -CCGA---CCGGUCGUGGA-CCa--------------GGUCGCGa -5'
23037 3' -61.8 NC_005178.1 + 16715 0.72 0.091052
Target:  5'- -aCUGaGCCGGCGcCCUGGUCCucgcaucgcuGCGCUg -3'
miRNA:   3'- ccGAC-CGGUCGU-GGACCAGGu---------CGCGA- -5'
23037 3' -61.8 NC_005178.1 + 28261 0.72 0.104603
Target:  5'- cGCUGGCCGcCGCCaaUGGUgucaguggggugaCCGGCGCUg -3'
miRNA:   3'- cCGACCGGUcGUGG--ACCA-------------GGUCGCGA- -5'
23037 3' -61.8 NC_005178.1 + 13880 0.72 0.109118
Target:  5'- ---aGGCCAGCGCCgcccggcgugaacgGG-CCAGCGCg -3'
miRNA:   3'- ccgaCCGGUCGUGGa-------------CCaGGUCGCGa -5'
23037 3' -61.8 NC_005178.1 + 13038 0.7 0.138708
Target:  5'- uGCUGGCCAGCcuggccgauGCCUacaacaagacGGUC-AGCGCg -3'
miRNA:   3'- cCGACCGGUCG---------UGGA----------CCAGgUCGCGa -5'
23037 3' -61.8 NC_005178.1 + 13110 0.7 0.138708
Target:  5'- cGCUGGCCAcCGCUaUGGaggugcUCCAGCGCc -3'
miRNA:   3'- cCGACCGGUcGUGG-ACC------AGGUCGCGa -5'
23037 3' -61.8 NC_005178.1 + 22945 0.69 0.154849
Target:  5'- cGCUGGcCCAGUGCCUGuGgugCUgaAGCGCg -3'
miRNA:   3'- cCGACC-GGUCGUGGAC-Ca--GG--UCGCGa -5'
23037 3' -61.8 NC_005178.1 + 26714 0.69 0.163542
Target:  5'- gGGgUGGCCaagGGCGCCUGGgacgaaaugCuCGGCGUg -3'
miRNA:   3'- -CCgACCGG---UCGUGGACCa--------G-GUCGCGa -5'
23037 3' -61.8 NC_005178.1 + 12044 0.69 0.172672
Target:  5'- cGGCuUGGCCcuGGCccuguuCCUGGUgaugguugcgaCCAGCGCc -3'
miRNA:   3'- -CCG-ACCGG--UCGu-----GGACCA-----------GGUCGCGa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.