miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23037 3' -61.8 NC_005178.1 + 28155 0.69 0.17314
Target:  5'- gGGCUgacGGUCGGCGCCUcGGcuguauccgccucggCCGGCGCc -3'
miRNA:   3'- -CCGA---CCGGUCGUGGA-CCa--------------GGUCGCGa -5'
23037 3' -61.8 NC_005178.1 + 20467 0.68 0.18722
Target:  5'- aGCuUGGCCAGguugguCGCCUGGgcgUCCAGgGCc -3'
miRNA:   3'- cCG-ACCGGUC------GUGGACC---AGGUCgCGa -5'
23037 3' -61.8 NC_005178.1 + 6766 0.68 0.192304
Target:  5'- -cCUGGCuCAGCagugaggccGCCcGGUCCAGgCGCUc -3'
miRNA:   3'- ccGACCG-GUCG---------UGGaCCAGGUC-GCGA- -5'
23037 3' -61.8 NC_005178.1 + 3086 0.68 0.197509
Target:  5'- gGGC--GCCAcGCucgGCCUGGUCCaggaAGCGCUc -3'
miRNA:   3'- -CCGacCGGU-CG---UGGACCAGG----UCGCGA- -5'
23037 3' -61.8 NC_005178.1 + 27538 0.68 0.202836
Target:  5'- -cCUGGCCucGGCGaucuUCUGGUCCAG-GCUg -3'
miRNA:   3'- ccGACCGG--UCGU----GGACCAGGUCgCGA- -5'
23037 3' -61.8 NC_005178.1 + 20066 0.67 0.213865
Target:  5'- gGGCUGGCCGuuCugCUcuuucuuuagGGUCUGGUGCUc -3'
miRNA:   3'- -CCGACCGGUc-GugGA----------CCAGGUCGCGA- -5'
23037 3' -61.8 NC_005178.1 + 1487 0.67 0.220148
Target:  5'- cGCgGGCCGGCugCggaacaucgaagauGUCCAGCGUUc -3'
miRNA:   3'- cCGaCCGGUCGugGac------------CAGGUCGCGA- -5'
23037 3' -61.8 NC_005178.1 + 17945 0.67 0.237469
Target:  5'- cGCUGGC--GUACCgGGUCCAGgaGCa -3'
miRNA:   3'- cCGACCGguCGUGGaCCAGGUCg-CGa -5'
23037 3' -61.8 NC_005178.1 + 34497 0.67 0.243701
Target:  5'- aGCUGGCuCGGCGCCagggaGGUCgAGC-Cg -3'
miRNA:   3'- cCGACCG-GUCGUGGa----CCAGgUCGcGa -5'
23037 3' -61.8 NC_005178.1 + 27799 0.67 0.243701
Target:  5'- -aCUGGCU--CGCCaGGUCCAgGCGCUg -3'
miRNA:   3'- ccGACCGGucGUGGaCCAGGU-CGCGA- -5'
23037 3' -61.8 NC_005178.1 + 2906 0.66 0.250069
Target:  5'- cGGUgcgGGCCAuCAUCaGGUCUAGgGCg -3'
miRNA:   3'- -CCGa--CCGGUcGUGGaCCAGGUCgCGa -5'
23037 3' -61.8 NC_005178.1 + 32068 0.66 0.252654
Target:  5'- cGGCgugGGUCGGCACCcauagcggcuucugcUGG-CC-GCGCa -3'
miRNA:   3'- -CCGa--CCGGUCGUGG---------------ACCaGGuCGCGa -5'
23037 3' -61.8 NC_005178.1 + 28309 0.66 0.263215
Target:  5'- cGGC-GGCCAGCgaggcggcagcgGCCUGGauagcggCGGCGCc -3'
miRNA:   3'- -CCGaCCGGUCG------------UGGACCag-----GUCGCGa -5'
23037 3' -61.8 NC_005178.1 + 5406 0.66 0.272748
Target:  5'- gGGCUcggGGCC-GCACCgguguacagcuccaGGUUCAgGCGCUg -3'
miRNA:   3'- -CCGA---CCGGuCGUGGa-------------CCAGGU-CGCGA- -5'
23037 3' -61.8 NC_005178.1 + 18153 0.66 0.276918
Target:  5'- gGGCUgGGCCAgGCGCUgcggcaGGUucgCCAGCuGCUc -3'
miRNA:   3'- -CCGA-CCGGU-CGUGGa-----CCA---GGUCG-CGA- -5'
23037 3' -61.8 NC_005178.1 + 23507 0.66 0.276918
Target:  5'- gGGCgcccUGGCCGucGC-CCUGGgcgUCGGCGUa -3'
miRNA:   3'- -CCG----ACCGGU--CGuGGACCa--GGUCGCGa -5'
23037 3' -61.8 NC_005178.1 + 14712 0.66 0.291184
Target:  5'- cGGC-GGCgC-GCuCCUGGuagaacUCCAGCGCg -3'
miRNA:   3'- -CCGaCCG-GuCGuGGACC------AGGUCGCGa -5'
23037 3' -61.8 NC_005178.1 + 3784 0.69 0.177406
Target:  5'- aGgUGGCCAGCuugGCCUggcGGUCCaugucGGCGCc -3'
miRNA:   3'- cCgACCGGUCG---UGGA---CCAGG-----UCGCGa -5'
23037 3' -61.8 NC_005178.1 + 16809 0.69 0.159142
Target:  5'- aGCgUGGuCCAauCACCUGGgCCAGCGCa -3'
miRNA:   3'- cCG-ACC-GGUc-GUGGACCaGGUCGCGa -5'
23037 3' -61.8 NC_005178.1 + 20835 0.69 0.159142
Target:  5'- aGCUGGUCaaccgagguaGGCACCgaGGUacgcCCGGCGCUc -3'
miRNA:   3'- cCGACCGG----------UCGUGGa-CCA----GGUCGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.