Results 21 - 40 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23037 | 3' | -61.8 | NC_005178.1 | + | 20835 | 0.69 | 0.159142 |
Target: 5'- aGCUGGUCaaccgagguaGGCACCgaGGUacgcCCGGCGCUc -3' miRNA: 3'- cCGACCGG----------UCGUGGa-CCA----GGUCGCGA- -5' |
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23037 | 3' | -61.8 | NC_005178.1 | + | 16809 | 0.69 | 0.159142 |
Target: 5'- aGCgUGGuCCAauCACCUGGgCCAGCGCa -3' miRNA: 3'- cCG-ACC-GGUc-GUGGACCaGGUCGCGa -5' |
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23037 | 3' | -61.8 | NC_005178.1 | + | 26714 | 0.69 | 0.163542 |
Target: 5'- gGGgUGGCCaagGGCGCCUGGgacgaaaugCuCGGCGUg -3' miRNA: 3'- -CCgACCGG---UCGUGGACCa--------G-GUCGCGa -5' |
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23037 | 3' | -61.8 | NC_005178.1 | + | 12044 | 0.69 | 0.172672 |
Target: 5'- cGGCuUGGCCcuGGCccuguuCCUGGUgaugguugcgaCCAGCGCc -3' miRNA: 3'- -CCG-ACCGG--UCGu-----GGACCA-----------GGUCGCGa -5' |
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23037 | 3' | -61.8 | NC_005178.1 | + | 28155 | 0.69 | 0.17314 |
Target: 5'- gGGCUgacGGUCGGCGCCUcGGcuguauccgccucggCCGGCGCc -3' miRNA: 3'- -CCGA---CCGGUCGUGGA-CCa--------------GGUCGCGa -5' |
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23037 | 3' | -61.8 | NC_005178.1 | + | 3784 | 0.69 | 0.177406 |
Target: 5'- aGgUGGCCAGCuugGCCUggcGGUCCaugucGGCGCc -3' miRNA: 3'- cCgACCGGUCG---UGGA---CCAGG-----UCGCGa -5' |
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23037 | 3' | -61.8 | NC_005178.1 | + | 20467 | 0.68 | 0.18722 |
Target: 5'- aGCuUGGCCAGguugguCGCCUGGgcgUCCAGgGCc -3' miRNA: 3'- cCG-ACCGGUC------GUGGACC---AGGUCgCGa -5' |
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23037 | 3' | -61.8 | NC_005178.1 | + | 6766 | 0.68 | 0.192304 |
Target: 5'- -cCUGGCuCAGCagugaggccGCCcGGUCCAGgCGCUc -3' miRNA: 3'- ccGACCG-GUCG---------UGGaCCAGGUC-GCGA- -5' |
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23037 | 3' | -61.8 | NC_005178.1 | + | 35284 | 0.68 | 0.192304 |
Target: 5'- ---cGGCCaAGCAUCUGG-CCGGgGCUc -3' miRNA: 3'- ccgaCCGG-UCGUGGACCaGGUCgCGA- -5' |
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23037 | 3' | -61.8 | NC_005178.1 | + | 33925 | 0.68 | 0.192304 |
Target: 5'- cGGC-GGCCGGUGCC-GGcuuUCCGGgGCg -3' miRNA: 3'- -CCGaCCGGUCGUGGaCC---AGGUCgCGa -5' |
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23037 | 3' | -61.8 | NC_005178.1 | + | 3086 | 0.68 | 0.197509 |
Target: 5'- gGGC--GCCAcGCucgGCCUGGUCCaggaAGCGCUc -3' miRNA: 3'- -CCGacCGGU-CG---UGGACCAGG----UCGCGA- -5' |
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23037 | 3' | -61.8 | NC_005178.1 | + | 5279 | 0.68 | 0.20069 |
Target: 5'- aGGCcgccaccguucagGGCCGGCGCgagCUGGaacuggccgaccUCCAGCGCc -3' miRNA: 3'- -CCGa------------CCGGUCGUG---GACC------------AGGUCGCGa -5' |
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23037 | 3' | -61.8 | NC_005178.1 | + | 27538 | 0.68 | 0.202836 |
Target: 5'- -cCUGGCCucGGCGaucuUCUGGUCCAG-GCUg -3' miRNA: 3'- ccGACCGG--UCGU----GGACCAGGUCgCGA- -5' |
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23037 | 3' | -61.8 | NC_005178.1 | + | 8800 | 0.68 | 0.205001 |
Target: 5'- cGCUGaGCC-GCACCaGGUcggcaagaaagucgcCCGGCGCg -3' miRNA: 3'- cCGAC-CGGuCGUGGaCCA---------------GGUCGCGa -5' |
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23037 | 3' | -61.8 | NC_005178.1 | + | 7726 | 0.67 | 0.213301 |
Target: 5'- aGCcGGCCgaagaccugaagaAGCGCCUGGcgguccUCCAGgGCg -3' miRNA: 3'- cCGaCCGG-------------UCGUGGACC------AGGUCgCGa -5' |
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23037 | 3' | -61.8 | NC_005178.1 | + | 20066 | 0.67 | 0.213865 |
Target: 5'- gGGCUGGCCGuuCugCUcuuucuuuagGGUCUGGUGCUc -3' miRNA: 3'- -CCGACCGGUc-GugGA----------CCAGGUCGCGA- -5' |
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23037 | 3' | -61.8 | NC_005178.1 | + | 16801 | 0.67 | 0.21957 |
Target: 5'- uGCUGGCCAGCcuGCC-GGcCCAGgacaUGCa -3' miRNA: 3'- cCGACCGGUCG--UGGaCCaGGUC----GCGa -5' |
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23037 | 3' | -61.8 | NC_005178.1 | + | 1487 | 0.67 | 0.220148 |
Target: 5'- cGCgGGCCGGCugCggaacaucgaagauGUCCAGCGUUc -3' miRNA: 3'- cCGaCCGGUCGugGac------------CAGGUCGCGA- -5' |
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23037 | 3' | -61.8 | NC_005178.1 | + | 25865 | 0.67 | 0.221889 |
Target: 5'- cGGCaGGUCAGUACCgccaGGccaugcggcaguugCCGGCGCa -3' miRNA: 3'- -CCGaCCGGUCGUGGa---CCa-------------GGUCGCGa -5' |
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23037 | 3' | -61.8 | NC_005178.1 | + | 12657 | 0.67 | 0.227181 |
Target: 5'- cGGC-GGCCGGCgcgcuggcgggugGCCUGGuugccugcggccugcUCgCGGCGCg -3' miRNA: 3'- -CCGaCCGGUCG-------------UGGACC---------------AG-GUCGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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