miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23037 3' -61.8 NC_005178.1 + 27538 0.68 0.202836
Target:  5'- -cCUGGCCucGGCGaucuUCUGGUCCAG-GCUg -3'
miRNA:   3'- ccGACCGG--UCGU----GGACCAGGUCgCGA- -5'
23037 3' -61.8 NC_005178.1 + 20467 0.68 0.18722
Target:  5'- aGCuUGGCCAGguugguCGCCUGGgcgUCCAGgGCc -3'
miRNA:   3'- cCG-ACCGGUC------GUGGACC---AGGUCgCGa -5'
23037 3' -61.8 NC_005178.1 + 6766 0.68 0.192304
Target:  5'- -cCUGGCuCAGCagugaggccGCCcGGUCCAGgCGCUc -3'
miRNA:   3'- ccGACCG-GUCG---------UGGaCCAGGUC-GCGA- -5'
23037 3' -61.8 NC_005178.1 + 35284 0.68 0.192304
Target:  5'- ---cGGCCaAGCAUCUGG-CCGGgGCUc -3'
miRNA:   3'- ccgaCCGG-UCGUGGACCaGGUCgCGA- -5'
23037 3' -61.8 NC_005178.1 + 8800 0.68 0.205001
Target:  5'- cGCUGaGCC-GCACCaGGUcggcaagaaagucgcCCGGCGCg -3'
miRNA:   3'- cCGAC-CGGuCGUGGaCCA---------------GGUCGCGa -5'
23037 3' -61.8 NC_005178.1 + 5279 0.68 0.20069
Target:  5'- aGGCcgccaccguucagGGCCGGCGCgagCUGGaacuggccgaccUCCAGCGCc -3'
miRNA:   3'- -CCGa------------CCGGUCGUG---GACC------------AGGUCGCGa -5'
23037 3' -61.8 NC_005178.1 + 33925 0.68 0.192304
Target:  5'- cGGC-GGCCGGUGCC-GGcuuUCCGGgGCg -3'
miRNA:   3'- -CCGaCCGGUCGUGGaCC---AGGUCgCGa -5'
23037 3' -61.8 NC_005178.1 + 20835 0.69 0.159142
Target:  5'- aGCUGGUCaaccgagguaGGCACCgaGGUacgcCCGGCGCUc -3'
miRNA:   3'- cCGACCGG----------UCGUGGa-CCA----GGUCGCGA- -5'
23037 3' -61.8 NC_005178.1 + 1296 0.69 0.154849
Target:  5'- aGCguucgGGCCAGaGCUUcacagggcucaGGUCCAGCGCg -3'
miRNA:   3'- cCGa----CCGGUCgUGGA-----------CCAGGUCGCGa -5'
23037 3' -61.8 NC_005178.1 + 3784 0.69 0.177406
Target:  5'- aGgUGGCCAGCuugGCCUggcGGUCCaugucGGCGCc -3'
miRNA:   3'- cCgACCGGUCG---UGGA---CCAGG-----UCGCGa -5'
23037 3' -61.8 NC_005178.1 + 26714 0.69 0.163542
Target:  5'- gGGgUGGCCaagGGCGCCUGGgacgaaaugCuCGGCGUg -3'
miRNA:   3'- -CCgACCGG---UCGUGGACCa--------G-GUCGCGa -5'
23037 3' -61.8 NC_005178.1 + 12044 0.69 0.172672
Target:  5'- cGGCuUGGCCcuGGCccuguuCCUGGUgaugguugcgaCCAGCGCc -3'
miRNA:   3'- -CCG-ACCGG--UCGu-----GGACCA-----------GGUCGCGa -5'
23037 3' -61.8 NC_005178.1 + 22945 0.69 0.154849
Target:  5'- cGCUGGcCCAGUGCCUGuGgugCUgaAGCGCg -3'
miRNA:   3'- cCGACC-GGUCGUGGAC-Ca--GG--UCGCGa -5'
23037 3' -61.8 NC_005178.1 + 28155 0.69 0.17314
Target:  5'- gGGCUgacGGUCGGCGCCUcGGcuguauccgccucggCCGGCGCc -3'
miRNA:   3'- -CCGA---CCGGUCGUGGA-CCa--------------GGUCGCGa -5'
23037 3' -61.8 NC_005178.1 + 16809 0.69 0.159142
Target:  5'- aGCgUGGuCCAauCACCUGGgCCAGCGCa -3'
miRNA:   3'- cCG-ACC-GGUc-GUGGACCaGGUCGCGa -5'
23037 3' -61.8 NC_005178.1 + 13038 0.7 0.138708
Target:  5'- uGCUGGCCAGCcuggccgauGCCUacaacaagacGGUC-AGCGCg -3'
miRNA:   3'- cCGACCGGUCG---------UGGA----------CCAGgUCGCGa -5'
23037 3' -61.8 NC_005178.1 + 10411 0.7 0.146576
Target:  5'- aGCUcGGCCAGCGCa--GcCCGGCGCg -3'
miRNA:   3'- cCGA-CCGGUCGUGgacCaGGUCGCGa -5'
23037 3' -61.8 NC_005178.1 + 13110 0.7 0.138708
Target:  5'- cGCUGGCCAcCGCUaUGGaggugcUCCAGCGCc -3'
miRNA:   3'- cCGACCGGUcGUGG-ACC------AGGUCGCGa -5'
23037 3' -61.8 NC_005178.1 + 28459 0.71 0.117378
Target:  5'- cGCUGGUCGGUguGCCUGGUCCcuggaccuGGcCGCc -3'
miRNA:   3'- cCGACCGGUCG--UGGACCAGG--------UC-GCGa -5'
23037 3' -61.8 NC_005178.1 + 13087 0.72 0.099137
Target:  5'- aGGCUGGCCAGCAgCUGcaccuUCaCGGCGg- -3'
miRNA:   3'- -CCGACCGGUCGUgGACc----AG-GUCGCga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.