miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23037 3' -61.8 NC_005178.1 + 5406 0.66 0.272748
Target:  5'- gGGCUcggGGCC-GCACCgguguacagcuccaGGUUCAgGCGCUg -3'
miRNA:   3'- -CCGA---CCGGuCGUGGa-------------CCAGGU-CGCGA- -5'
23037 3' -61.8 NC_005178.1 + 1487 0.67 0.220148
Target:  5'- cGCgGGCCGGCugCggaacaucgaagauGUCCAGCGUUc -3'
miRNA:   3'- cCGaCCGGUCGugGac------------CAGGUCGCGA- -5'
23037 3' -61.8 NC_005178.1 + 17945 0.67 0.237469
Target:  5'- cGCUGGC--GUACCgGGUCCAGgaGCa -3'
miRNA:   3'- cCGACCGguCGUGGaCCAGGUCg-CGa -5'
23037 3' -61.8 NC_005178.1 + 18153 0.66 0.276918
Target:  5'- gGGCUgGGCCAgGCGCUgcggcaGGUucgCCAGCuGCUc -3'
miRNA:   3'- -CCGA-CCGGU-CGUGGa-----CCA---GGUCG-CGA- -5'
23037 3' -61.8 NC_005178.1 + 16809 0.69 0.159142
Target:  5'- aGCgUGGuCCAauCACCUGGgCCAGCGCa -3'
miRNA:   3'- cCG-ACC-GGUc-GUGGACCaGGUCGCGa -5'
23037 3' -61.8 NC_005178.1 + 34497 0.67 0.243701
Target:  5'- aGCUGGCuCGGCGCCagggaGGUCgAGC-Cg -3'
miRNA:   3'- cCGACCG-GUCGUGGa----CCAGgUCGcGa -5'
23037 3' -61.8 NC_005178.1 + 32068 0.66 0.252654
Target:  5'- cGGCgugGGUCGGCACCcauagcggcuucugcUGG-CC-GCGCa -3'
miRNA:   3'- -CCGa--CCGGUCGUGG---------------ACCaGGuCGCGa -5'
23037 3' -61.8 NC_005178.1 + 23507 0.66 0.276918
Target:  5'- gGGCgcccUGGCCGucGC-CCUGGgcgUCGGCGUa -3'
miRNA:   3'- -CCG----ACCGGU--CGuGGACCa--GGUCGCGa -5'
23037 3' -61.8 NC_005178.1 + 20066 0.67 0.213865
Target:  5'- gGGCUGGCCGuuCugCUcuuucuuuagGGUCUGGUGCUc -3'
miRNA:   3'- -CCGACCGGUc-GugGA----------CCAGGUCGCGA- -5'
23037 3' -61.8 NC_005178.1 + 28309 0.66 0.263215
Target:  5'- cGGC-GGCCAGCgaggcggcagcgGCCUGGauagcggCGGCGCc -3'
miRNA:   3'- -CCGaCCGGUCG------------UGGACCag-----GUCGCGa -5'
23037 3' -61.8 NC_005178.1 + 2906 0.66 0.250069
Target:  5'- cGGUgcgGGCCAuCAUCaGGUCUAGgGCg -3'
miRNA:   3'- -CCGa--CCGGUcGUGGaCCAGGUCgCGa -5'
23037 3' -61.8 NC_005178.1 + 27799 0.67 0.243701
Target:  5'- -aCUGGCU--CGCCaGGUCCAgGCGCUg -3'
miRNA:   3'- ccGACCGGucGUGGaCCAGGU-CGCGA- -5'
23037 3' -61.8 NC_005178.1 + 28261 0.72 0.104603
Target:  5'- cGCUGGCCGcCGCCaaUGGUgucaguggggugaCCGGCGCUg -3'
miRNA:   3'- cCGACCGGUcGUGG--ACCA-------------GGUCGCGA- -5'
23037 3' -61.8 NC_005178.1 + 13110 0.7 0.138708
Target:  5'- cGCUGGCCAcCGCUaUGGaggugcUCCAGCGCc -3'
miRNA:   3'- cCGACCGGUcGUGG-ACC------AGGUCGCGa -5'
23037 3' -61.8 NC_005178.1 + 7726 0.67 0.213301
Target:  5'- aGCcGGCCgaagaccugaagaAGCGCCUGGcgguccUCCAGgGCg -3'
miRNA:   3'- cCGaCCGG-------------UCGUGGACC------AGGUCgCGa -5'
23037 3' -61.8 NC_005178.1 + 22945 0.69 0.154849
Target:  5'- cGCUGGcCCAGUGCCUGuGgugCUgaAGCGCg -3'
miRNA:   3'- cCGACC-GGUCGUGGAC-Ca--GG--UCGCGa -5'
23037 3' -61.8 NC_005178.1 + 25364 0.66 0.256573
Target:  5'- aGGCUGGCCGGgAgCU-GUCCGGUu-- -3'
miRNA:   3'- -CCGACCGGUCgUgGAcCAGGUCGcga -5'
23037 3' -61.8 NC_005178.1 + 8800 0.68 0.205001
Target:  5'- cGCUGaGCC-GCACCaGGUcggcaagaaagucgcCCGGCGCg -3'
miRNA:   3'- cCGAC-CGGuCGUGGaCCA---------------GGUCGCGa -5'
23037 3' -61.8 NC_005178.1 + 5279 0.68 0.20069
Target:  5'- aGGCcgccaccguucagGGCCGGCGCgagCUGGaacuggccgaccUCCAGCGCc -3'
miRNA:   3'- -CCGa------------CCGGUCGUG---GACC------------AGGUCGCGa -5'
23037 3' -61.8 NC_005178.1 + 35284 0.68 0.192304
Target:  5'- ---cGGCCaAGCAUCUGG-CCGGgGCUc -3'
miRNA:   3'- ccgaCCGG-UCGUGGACCaGGUCgCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.