Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23040 | 3' | -56.4 | NC_005178.1 | + | 30197 | 0.65 | 0.537427 |
Target: 5'- cGCuUGUUgaGGGAGCCGaucaUcacuggacggaacuGACCGGCAGCGa -3' miRNA: 3'- -CG-ACGG--UCUUCGGC----A--------------UUGGCCGUCGU- -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 8004 | 0.66 | 0.529742 |
Target: 5'- gGCUGCCGG-GGCUGacccugacACCGGCAuCGa -3' miRNA: 3'- -CGACGGUCuUCGGCau------UGGCCGUcGU- -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 35443 | 0.66 | 0.529742 |
Target: 5'- cGCUGaCCGGGcgccaagguaAGCCGUAcccgcCCGGcCAGUu -3' miRNA: 3'- -CGAC-GGUCU----------UCGGCAUu----GGCC-GUCGu -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 12643 | 0.66 | 0.529742 |
Target: 5'- cGCU-CCAGGcGGCCGUcgAugCGuuGCAGCAg -3' miRNA: 3'- -CGAcGGUCU-UCGGCA--UugGC--CGUCGU- -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 17589 | 0.66 | 0.529742 |
Target: 5'- uGCUGCCAGAucgGGUCGUc-CCaGCGGa- -3' miRNA: 3'- -CGACGGUCU---UCGGCAuuGGcCGUCgu -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 10350 | 0.66 | 0.528647 |
Target: 5'- cGC-GCCGGGcugcgcuGGCCG-AGCUggugGGCAGCGa -3' miRNA: 3'- -CGaCGGUCU-------UCGGCaUUGG----CCGUCGU- -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 29502 | 0.66 | 0.518834 |
Target: 5'- gGCUGC----GGCCGauauGCgGGCAGCAg -3' miRNA: 3'- -CGACGgucuUCGGCau--UGgCCGUCGU- -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 15950 | 0.66 | 0.518834 |
Target: 5'- uGCgGCCGGuGGUCGaaGGCCuGCGGCAa -3' miRNA: 3'- -CGaCGGUCuUCGGCa-UUGGcCGUCGU- -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 6912 | 0.66 | 0.518834 |
Target: 5'- aGCUGCUcGccGCUgagGUGGCCcGCAGCAg -3' miRNA: 3'- -CGACGGuCuuCGG---CAUUGGcCGUCGU- -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 16646 | 0.66 | 0.518834 |
Target: 5'- aGCuUGaCCAGggGCgGUAAUgacguugccaUGGCGGCc -3' miRNA: 3'- -CG-AC-GGUCuuCGgCAUUG----------GCCGUCGu -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 21695 | 0.66 | 0.517748 |
Target: 5'- aGCUcGuCCGGGAGCUgagccgccgaGUAACCGGCcaucuucgccuggGGCGg -3' miRNA: 3'- -CGA-C-GGUCUUCGG----------CAUUGGCCG-------------UCGU- -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 9461 | 0.66 | 0.517748 |
Target: 5'- uCUGCCGGAcGUgGUGGuCCGGUacugaugAGCAg -3' miRNA: 3'- cGACGGUCUuCGgCAUU-GGCCG-------UCGU- -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 23549 | 0.66 | 0.508016 |
Target: 5'- -gUGCCuuGAgcAGCCG--GCCGaGCAGCGg -3' miRNA: 3'- cgACGGu-CU--UCGGCauUGGC-CGUCGU- -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 20106 | 0.66 | 0.508016 |
Target: 5'- cGC-GCCAuucGAAGUCcaggaaacGGCCGGCAGCGg -3' miRNA: 3'- -CGaCGGU---CUUCGGca------UUGGCCGUCGU- -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 31491 | 0.66 | 0.497294 |
Target: 5'- aGCaGCUGGAuaucaGGCCa-GAUCGGCAGCGc -3' miRNA: 3'- -CGaCGGUCU-----UCGGcaUUGGCCGUCGU- -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 22267 | 0.66 | 0.497294 |
Target: 5'- --cGCCAGGcuGGCCc--GCCaGGCGGCGg -3' miRNA: 3'- cgaCGGUCU--UCGGcauUGG-CCGUCGU- -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 6952 | 0.66 | 0.49091 |
Target: 5'- --aGCCGGcgaggcaaucggcauGAGCCGUucGACCG-CAGCAc -3' miRNA: 3'- cgaCGGUC---------------UUCGGCA--UUGGCcGUCGU- -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 10593 | 0.67 | 0.476165 |
Target: 5'- --gGCCgAGcGAGCCGgcACCG-CAGCAa -3' miRNA: 3'- cgaCGG-UC-UUCGGCauUGGCcGUCGU- -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 17945 | 0.67 | 0.476165 |
Target: 5'- cGCUGgcguaccggguCCAGGAGCaCGUccugGACCucgccgagGGCGGCAg -3' miRNA: 3'- -CGAC-----------GGUCUUCG-GCA----UUGG--------CCGUCGU- -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 14293 | 0.67 | 0.465769 |
Target: 5'- cUUGCCAGAcgcGGCCcuuGCCGGC-GCc -3' miRNA: 3'- cGACGGUCU---UCGGcauUGGCCGuCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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