Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23040 | 3' | -56.4 | NC_005178.1 | + | 25365 | 0.67 | 0.455492 |
Target: 5'- gGCUgGCCGGGAGCUGU--CCGGUuugggggagacAGCc -3' miRNA: 3'- -CGA-CGGUCUUCGGCAuuGGCCG-----------UCGu -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 16208 | 0.67 | 0.454471 |
Target: 5'- gGCgUGCCGGGcggguacuucccgAGCCG-GAUCGGCAGa- -3' miRNA: 3'- -CG-ACGGUCU-------------UCGGCaUUGGCCGUCgu -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 24563 | 0.67 | 0.445338 |
Target: 5'- uGCUGgacaCCAGcAAGCCGgauACCGGCGa-- -3' miRNA: 3'- -CGAC----GGUC-UUCGGCau-UGGCCGUcgu -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 8571 | 0.67 | 0.445338 |
Target: 5'- -aUGCCGcAGGCCG-AGCCGGCcccaacuGCAc -3' miRNA: 3'- cgACGGUcUUCGGCaUUGGCCGu------CGU- -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 19684 | 0.67 | 0.445338 |
Target: 5'- gGCUugGCCAGAAGauGgcGCCGGaCGGUu -3' miRNA: 3'- -CGA--CGGUCUUCggCauUGGCC-GUCGu -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 9137 | 0.67 | 0.435313 |
Target: 5'- uCUGCUcgacgaucuucuGGAGGCCgGUGACCGcgagcGCGGCGc -3' miRNA: 3'- cGACGG------------UCUUCGG-CAUUGGC-----CGUCGU- -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 4811 | 0.67 | 0.434317 |
Target: 5'- --aGCCGGAcgGGCCGUagaagcaGACCaGGCcgGGCAa -3' miRNA: 3'- cgaCGGUCU--UCGGCA-------UUGG-CCG--UCGU- -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 10336 | 0.67 | 0.425418 |
Target: 5'- aGCUGCUcGAcuaccaccAG-CGUGGCCGGCAGg- -3' miRNA: 3'- -CGACGGuCU--------UCgGCAUUGGCCGUCgu -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 10227 | 0.68 | 0.413724 |
Target: 5'- uGCUGCCGGAuaccguccgcgacauGGCCGgacgcaucggccuGCCGGCcacGCu -3' miRNA: 3'- -CGACGGUCU---------------UCGGCau-----------UGGCCGu--CGu -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 9659 | 0.68 | 0.406039 |
Target: 5'- cGCgGCCGGuggcuucGCCG-AGCCGGCcgaGGCGg -3' miRNA: 3'- -CGaCGGUCuu-----CGGCaUUGGCCG---UCGU- -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 7418 | 0.68 | 0.387225 |
Target: 5'- gGCUuCCAGcgcgacGCCucGGCCGGCAGCAc -3' miRNA: 3'- -CGAcGGUCuu----CGGcaUUGGCCGUCGU- -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 16266 | 0.68 | 0.377124 |
Target: 5'- cGCUGCgGcauggccGAGGCCGgucACCGcucGCAGCAg -3' miRNA: 3'- -CGACGgU-------CUUCGGCau-UGGC---CGUCGU- -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 20919 | 0.68 | 0.372592 |
Target: 5'- cGCU-CCAGGAcGCCGaggucaucggcguGCCGGUAGCGg -3' miRNA: 3'- -CGAcGGUCUU-CGGCau-----------UGGCCGUCGU- -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 10097 | 0.69 | 0.3601 |
Target: 5'- cGCUgGCCAGGAGCgCgGUGAUuuUGcGCAGCAc -3' miRNA: 3'- -CGA-CGGUCUUCG-G-CAUUG--GC-CGUCGU- -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 22163 | 0.69 | 0.3601 |
Target: 5'- uGCUGCCGGuuacGGCUu---CUGGCAGCu -3' miRNA: 3'- -CGACGGUCu---UCGGcauuGGCCGUCGu -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 16190 | 0.69 | 0.351358 |
Target: 5'- cCUGCUgcGAGCgGUGACCGGCcucGGCc -3' miRNA: 3'- cGACGGucUUCGgCAUUGGCCG---UCGu -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 3432 | 0.69 | 0.351358 |
Target: 5'- --gGCCGGAagggccGGCCGUGcAUCGGguGCu -3' miRNA: 3'- cgaCGGUCU------UCGGCAU-UGGCCguCGu -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 5803 | 0.69 | 0.33433 |
Target: 5'- -gUGCCcGAGGCCGccACCGauGCGGCGa -3' miRNA: 3'- cgACGGuCUUCGGCauUGGC--CGUCGU- -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 16657 | 0.7 | 0.309936 |
Target: 5'- cGCUGCCAgccaauggcGAGGCgGUccugggcgaucaGGCCGGCgcaGGCAu -3' miRNA: 3'- -CGACGGU---------CUUCGgCA------------UUGGCCG---UCGU- -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 25626 | 0.71 | 0.237852 |
Target: 5'- gGCUGCgGcGAAagccaccGCCGaguucGACCGGCAGCAg -3' miRNA: 3'- -CGACGgU-CUU-------CGGCa----UUGGCCGUCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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