miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23040 3' -56.4 NC_005178.1 + 10336 0.67 0.425418
Target:  5'- aGCUGCUcGAcuaccaccAG-CGUGGCCGGCAGg- -3'
miRNA:   3'- -CGACGGuCU--------UCgGCAUUGGCCGUCgu -5'
23040 3' -56.4 NC_005178.1 + 4811 0.67 0.434317
Target:  5'- --aGCCGGAcgGGCCGUagaagcaGACCaGGCcgGGCAa -3'
miRNA:   3'- cgaCGGUCU--UCGGCA-------UUGG-CCG--UCGU- -5'
23040 3' -56.4 NC_005178.1 + 9137 0.67 0.435313
Target:  5'- uCUGCUcgacgaucuucuGGAGGCCgGUGACCGcgagcGCGGCGc -3'
miRNA:   3'- cGACGG------------UCUUCGG-CAUUGGC-----CGUCGU- -5'
23040 3' -56.4 NC_005178.1 + 8571 0.67 0.445338
Target:  5'- -aUGCCGcAGGCCG-AGCCGGCcccaacuGCAc -3'
miRNA:   3'- cgACGGUcUUCGGCaUUGGCCGu------CGU- -5'
23040 3' -56.4 NC_005178.1 + 24563 0.67 0.445338
Target:  5'- uGCUGgacaCCAGcAAGCCGgauACCGGCGa-- -3'
miRNA:   3'- -CGAC----GGUC-UUCGGCau-UGGCCGUcgu -5'
23040 3' -56.4 NC_005178.1 + 19684 0.67 0.445338
Target:  5'- gGCUugGCCAGAAGauGgcGCCGGaCGGUu -3'
miRNA:   3'- -CGA--CGGUCUUCggCauUGGCC-GUCGu -5'
23040 3' -56.4 NC_005178.1 + 16208 0.67 0.454471
Target:  5'- gGCgUGCCGGGcggguacuucccgAGCCG-GAUCGGCAGa- -3'
miRNA:   3'- -CG-ACGGUCU-------------UCGGCaUUGGCCGUCgu -5'
23040 3' -56.4 NC_005178.1 + 25365 0.67 0.455492
Target:  5'- gGCUgGCCGGGAGCUGU--CCGGUuugggggagacAGCc -3'
miRNA:   3'- -CGA-CGGUCUUCGGCAuuGGCCG-----------UCGu -5'
23040 3' -56.4 NC_005178.1 + 14293 0.67 0.465769
Target:  5'- cUUGCCAGAcgcGGCCcuuGCCGGC-GCc -3'
miRNA:   3'- cGACGGUCU---UCGGcauUGGCCGuCGu -5'
23040 3' -56.4 NC_005178.1 + 17945 0.67 0.476165
Target:  5'- cGCUGgcguaccggguCCAGGAGCaCGUccugGACCucgccgagGGCGGCAg -3'
miRNA:   3'- -CGAC-----------GGUCUUCG-GCA----UUGG--------CCGUCGU- -5'
23040 3' -56.4 NC_005178.1 + 10593 0.67 0.476165
Target:  5'- --gGCCgAGcGAGCCGgcACCG-CAGCAa -3'
miRNA:   3'- cgaCGG-UC-UUCGGCauUGGCcGUCGU- -5'
23040 3' -56.4 NC_005178.1 + 6952 0.66 0.49091
Target:  5'- --aGCCGGcgaggcaaucggcauGAGCCGUucGACCG-CAGCAc -3'
miRNA:   3'- cgaCGGUC---------------UUCGGCA--UUGGCcGUCGU- -5'
23040 3' -56.4 NC_005178.1 + 22267 0.66 0.497294
Target:  5'- --cGCCAGGcuGGCCc--GCCaGGCGGCGg -3'
miRNA:   3'- cgaCGGUCU--UCGGcauUGG-CCGUCGU- -5'
23040 3' -56.4 NC_005178.1 + 31491 0.66 0.497294
Target:  5'- aGCaGCUGGAuaucaGGCCa-GAUCGGCAGCGc -3'
miRNA:   3'- -CGaCGGUCU-----UCGGcaUUGGCCGUCGU- -5'
23040 3' -56.4 NC_005178.1 + 23549 0.66 0.508016
Target:  5'- -gUGCCuuGAgcAGCCG--GCCGaGCAGCGg -3'
miRNA:   3'- cgACGGu-CU--UCGGCauUGGC-CGUCGU- -5'
23040 3' -56.4 NC_005178.1 + 20106 0.66 0.508016
Target:  5'- cGC-GCCAuucGAAGUCcaggaaacGGCCGGCAGCGg -3'
miRNA:   3'- -CGaCGGU---CUUCGGca------UUGGCCGUCGU- -5'
23040 3' -56.4 NC_005178.1 + 9461 0.66 0.517748
Target:  5'- uCUGCCGGAcGUgGUGGuCCGGUacugaugAGCAg -3'
miRNA:   3'- cGACGGUCUuCGgCAUU-GGCCG-------UCGU- -5'
23040 3' -56.4 NC_005178.1 + 21695 0.66 0.517748
Target:  5'- aGCUcGuCCGGGAGCUgagccgccgaGUAACCGGCcaucuucgccuggGGCGg -3'
miRNA:   3'- -CGA-C-GGUCUUCGG----------CAUUGGCCG-------------UCGU- -5'
23040 3' -56.4 NC_005178.1 + 29502 0.66 0.518834
Target:  5'- gGCUGC----GGCCGauauGCgGGCAGCAg -3'
miRNA:   3'- -CGACGgucuUCGGCau--UGgCCGUCGU- -5'
23040 3' -56.4 NC_005178.1 + 6912 0.66 0.518834
Target:  5'- aGCUGCUcGccGCUgagGUGGCCcGCAGCAg -3'
miRNA:   3'- -CGACGGuCuuCGG---CAUUGGcCGUCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.