miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23040 3' -56.4 NC_005178.1 + 37280 0.75 0.136673
Target:  5'- gGCUGUCAGGuccggcGCUGU-GCCGGUAGCGa -3'
miRNA:   3'- -CGACGGUCUu-----CGGCAuUGGCCGUCGU- -5'
23040 3' -56.4 NC_005178.1 + 35443 0.66 0.529742
Target:  5'- cGCUGaCCGGGcgccaagguaAGCCGUAcccgcCCGGcCAGUu -3'
miRNA:   3'- -CGAC-GGUCU----------UCGGCAUu----GGCC-GUCGu -5'
23040 3' -56.4 NC_005178.1 + 31982 0.74 0.157587
Target:  5'- -aUGCC-GAuccagcgauGGCCGaUGACCGGCAGCGc -3'
miRNA:   3'- cgACGGuCU---------UCGGC-AUUGGCCGUCGU- -5'
23040 3' -56.4 NC_005178.1 + 31491 0.66 0.497294
Target:  5'- aGCaGCUGGAuaucaGGCCa-GAUCGGCAGCGc -3'
miRNA:   3'- -CGaCGGUCU-----UCGGcaUUGGCCGUCGU- -5'
23040 3' -56.4 NC_005178.1 + 30197 0.65 0.537427
Target:  5'- cGCuUGUUgaGGGAGCCGaucaUcacuggacggaacuGACCGGCAGCGa -3'
miRNA:   3'- -CG-ACGG--UCUUCGGC----A--------------UUGGCCGUCGU- -5'
23040 3' -56.4 NC_005178.1 + 29502 0.66 0.518834
Target:  5'- gGCUGC----GGCCGauauGCgGGCAGCAg -3'
miRNA:   3'- -CGACGgucuUCGGCau--UGgCCGUCGU- -5'
23040 3' -56.4 NC_005178.1 + 28307 0.76 0.114955
Target:  5'- aGCUGCCGG-GGCCGcuggagUGGCUGGUGGCGg -3'
miRNA:   3'- -CGACGGUCuUCGGC------AUUGGCCGUCGU- -5'
23040 3' -56.4 NC_005178.1 + 25842 0.74 0.153185
Target:  5'- --cGCCAu-GGCCGUGGCCGGCauuucGGCAg -3'
miRNA:   3'- cgaCGGUcuUCGGCAUUGGCCG-----UCGU- -5'
23040 3' -56.4 NC_005178.1 + 25626 0.71 0.237852
Target:  5'- gGCUGCgGcGAAagccaccGCCGaguucGACCGGCAGCAg -3'
miRNA:   3'- -CGACGgU-CUU-------CGGCa----UUGGCCGUCGU- -5'
23040 3' -56.4 NC_005178.1 + 25365 0.67 0.455492
Target:  5'- gGCUgGCCGGGAGCUGU--CCGGUuugggggagacAGCc -3'
miRNA:   3'- -CGA-CGGUCUUCGGCAuuGGCCG-----------UCGu -5'
23040 3' -56.4 NC_005178.1 + 24563 0.67 0.445338
Target:  5'- uGCUGgacaCCAGcAAGCCGgauACCGGCGa-- -3'
miRNA:   3'- -CGAC----GGUC-UUCGGCau-UGGCCGUcgu -5'
23040 3' -56.4 NC_005178.1 + 23549 0.66 0.508016
Target:  5'- -gUGCCuuGAgcAGCCG--GCCGaGCAGCGg -3'
miRNA:   3'- cgACGGu-CU--UCGGCauUGGC-CGUCGU- -5'
23040 3' -56.4 NC_005178.1 + 22267 0.66 0.497294
Target:  5'- --cGCCAGGcuGGCCc--GCCaGGCGGCGg -3'
miRNA:   3'- cgaCGGUCU--UCGGcauUGG-CCGUCGU- -5'
23040 3' -56.4 NC_005178.1 + 22226 1.11 0.000297
Target:  5'- aGCUGCCAGAAGCCGUAACCGGCAGCAg -3'
miRNA:   3'- -CGACGGUCUUCGGCAUUGGCCGUCGU- -5'
23040 3' -56.4 NC_005178.1 + 22163 0.69 0.3601
Target:  5'- uGCUGCCGGuuacGGCUu---CUGGCAGCu -3'
miRNA:   3'- -CGACGGUCu---UCGGcauuGGCCGUCGu -5'
23040 3' -56.4 NC_005178.1 + 21695 0.66 0.517748
Target:  5'- aGCUcGuCCGGGAGCUgagccgccgaGUAACCGGCcaucuucgccuggGGCGg -3'
miRNA:   3'- -CGA-C-GGUCUUCGG----------CAUUGGCCG-------------UCGU- -5'
23040 3' -56.4 NC_005178.1 + 20997 0.77 0.096494
Target:  5'- cGCUaCCGGGuucGCCGUGGgCGGCAGCAc -3'
miRNA:   3'- -CGAcGGUCUu--CGGCAUUgGCCGUCGU- -5'
23040 3' -56.4 NC_005178.1 + 20919 0.68 0.372592
Target:  5'- cGCU-CCAGGAcGCCGaggucaucggcguGCCGGUAGCGg -3'
miRNA:   3'- -CGAcGGUCUU-CGGCau-----------UGGCCGUCGU- -5'
23040 3' -56.4 NC_005178.1 + 20106 0.66 0.508016
Target:  5'- cGC-GCCAuucGAAGUCcaggaaacGGCCGGCAGCGg -3'
miRNA:   3'- -CGaCGGU---CUUCGGca------UUGGCCGUCGU- -5'
23040 3' -56.4 NC_005178.1 + 19684 0.67 0.445338
Target:  5'- gGCUugGCCAGAAGauGgcGCCGGaCGGUu -3'
miRNA:   3'- -CGA--CGGUCUUCggCauUGGCC-GUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.