Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23040 | 3' | -56.4 | NC_005178.1 | + | 17945 | 0.67 | 0.476165 |
Target: 5'- cGCUGgcguaccggguCCAGGAGCaCGUccugGACCucgccgagGGCGGCAg -3' miRNA: 3'- -CGAC-----------GGUCUUCG-GCA----UUGG--------CCGUCGU- -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 17589 | 0.66 | 0.529742 |
Target: 5'- uGCUGCCAGAucgGGUCGUc-CCaGCGGa- -3' miRNA: 3'- -CGACGGUCU---UCGGCAuuGGcCGUCgu -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 16657 | 0.7 | 0.309936 |
Target: 5'- cGCUGCCAgccaauggcGAGGCgGUccugggcgaucaGGCCGGCgcaGGCAu -3' miRNA: 3'- -CGACGGU---------CUUCGgCA------------UUGGCCG---UCGU- -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 16646 | 0.66 | 0.518834 |
Target: 5'- aGCuUGaCCAGggGCgGUAAUgacguugccaUGGCGGCc -3' miRNA: 3'- -CG-AC-GGUCuuCGgCAUUG----------GCCGUCGu -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 16266 | 0.68 | 0.377124 |
Target: 5'- cGCUGCgGcauggccGAGGCCGgucACCGcucGCAGCAg -3' miRNA: 3'- -CGACGgU-------CUUCGGCau-UGGC---CGUCGU- -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 16208 | 0.67 | 0.454471 |
Target: 5'- gGCgUGCCGGGcggguacuucccgAGCCG-GAUCGGCAGa- -3' miRNA: 3'- -CG-ACGGUCU-------------UCGGCaUUGGCCGUCgu -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 16190 | 0.69 | 0.351358 |
Target: 5'- cCUGCUgcGAGCgGUGACCGGCcucGGCc -3' miRNA: 3'- cGACGGucUUCGgCAUUGGCCG---UCGu -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 15950 | 0.66 | 0.518834 |
Target: 5'- uGCgGCCGGuGGUCGaaGGCCuGCGGCAa -3' miRNA: 3'- -CGaCGGUCuUCGGCa-UUGGcCGUCGU- -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 14293 | 0.67 | 0.465769 |
Target: 5'- cUUGCCAGAcgcGGCCcuuGCCGGC-GCc -3' miRNA: 3'- cGACGGUCU---UCGGcauUGGCCGuCGu -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 12643 | 0.66 | 0.529742 |
Target: 5'- cGCU-CCAGGcGGCCGUcgAugCGuuGCAGCAg -3' miRNA: 3'- -CGAcGGUCU-UCGGCA--UugGC--CGUCGU- -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 10831 | 0.72 | 0.208236 |
Target: 5'- uCUGCUGGAAGCCugcccgGUcAACUGGCAGCc -3' miRNA: 3'- cGACGGUCUUCGG------CA-UUGGCCGUCGu -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 10593 | 0.67 | 0.476165 |
Target: 5'- --gGCCgAGcGAGCCGgcACCG-CAGCAa -3' miRNA: 3'- cgaCGG-UC-UUCGGCauUGGCcGUCGU- -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 10350 | 0.66 | 0.528647 |
Target: 5'- cGC-GCCGGGcugcgcuGGCCG-AGCUggugGGCAGCGa -3' miRNA: 3'- -CGaCGGUCU-------UCGGCaUUGG----CCGUCGU- -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 10336 | 0.67 | 0.425418 |
Target: 5'- aGCUGCUcGAcuaccaccAG-CGUGGCCGGCAGg- -3' miRNA: 3'- -CGACGGuCU--------UCgGCAUUGGCCGUCgu -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 10227 | 0.68 | 0.413724 |
Target: 5'- uGCUGCCGGAuaccguccgcgacauGGCCGgacgcaucggccuGCCGGCcacGCu -3' miRNA: 3'- -CGACGGUCU---------------UCGGCau-----------UGGCCGu--CGu -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 10097 | 0.69 | 0.3601 |
Target: 5'- cGCUgGCCAGGAGCgCgGUGAUuuUGcGCAGCAc -3' miRNA: 3'- -CGA-CGGUCUUCG-G-CAUUG--GC-CGUCGU- -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 9659 | 0.68 | 0.406039 |
Target: 5'- cGCgGCCGGuggcuucGCCG-AGCCGGCcgaGGCGg -3' miRNA: 3'- -CGaCGGUCuu-----CGGCaUUGGCCG---UCGU- -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 9461 | 0.66 | 0.517748 |
Target: 5'- uCUGCCGGAcGUgGUGGuCCGGUacugaugAGCAg -3' miRNA: 3'- cGACGGUCUuCGgCAUU-GGCCG-------UCGU- -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 9137 | 0.67 | 0.435313 |
Target: 5'- uCUGCUcgacgaucuucuGGAGGCCgGUGACCGcgagcGCGGCGc -3' miRNA: 3'- cGACGG------------UCUUCGG-CAUUGGC-----CGUCGU- -5' |
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23040 | 3' | -56.4 | NC_005178.1 | + | 8571 | 0.67 | 0.445338 |
Target: 5'- -aUGCCGcAGGCCG-AGCCGGCcccaacuGCAc -3' miRNA: 3'- cgACGGUcUUCGGCaUUGGCCGu------CGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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