Results 21 - 30 of 30 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 23041 | 3' | -54 | NC_005178.1 | + | 25137 | 0.66 | 0.651258 |
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Target: 5'- aGCGGccgAGCUGguCGCGCu--GGUGUCCu -3' miRNA: 3'- -CGCCua-UCGAC--GCGUGcuuCUACGGG- -5' |
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| 23041 | 3' | -54 | NC_005178.1 | + | 439 | 0.66 | 0.662643 |
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Target: 5'- uGCGGAUcGCUGagauaCugGAGGGguccaaGCCCu -3' miRNA: 3'- -CGCCUAuCGACgc---GugCUUCUa-----CGGG- -5' |
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| 23041 | 3' | -54 | NC_005178.1 | + | 15021 | 0.66 | 0.673997 |
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Target: 5'- uGCGGAUGGCgGCcucgacCACGuccAGGAcGCCUg -3' miRNA: 3'- -CGCCUAUCGaCGc-----GUGC---UUCUaCGGG- -5' |
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| 23041 | 3' | -54 | NC_005178.1 | + | 34521 | 0.66 | 0.673997 |
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Target: 5'- cGCGGuc-GCUGCGuCGCaGggGcgGCgCu -3' miRNA: 3'- -CGCCuauCGACGC-GUG-CuuCuaCGgG- -5' |
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| 23041 | 3' | -54 | NC_005178.1 | + | 25559 | 0.66 | 0.673997 |
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Target: 5'- cGCuGGUGGCUGCcCGCGuggcGGUGUUCa -3' miRNA: 3'- -CGcCUAUCGACGcGUGCuu--CUACGGG- -5' |
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| 23041 | 3' | -54 | NC_005178.1 | + | 7709 | 0.66 | 0.673997 |
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Target: 5'- aCGGGccAGCUcGCGCugGAGGucGCCg -3' miRNA: 3'- cGCCUa-UCGA-CGCGugCUUCuaCGGg -5' |
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| 23041 | 3' | -54 | NC_005178.1 | + | 29020 | 0.66 | 0.685309 |
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Target: 5'- cGCaGGGUcacCUgGCGCACGgcGAUGgCCg -3' miRNA: 3'- -CG-CCUAuc-GA-CGCGUGCuuCUACgGG- -5' |
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| 23041 | 3' | -54 | NC_005178.1 | + | 12891 | 0.66 | 0.685309 |
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Target: 5'- aGCGGcgAGCgGUGCcauaGGAGAcGCCg -3' miRNA: 3'- -CGCCuaUCGaCGCGug--CUUCUaCGGg -5' |
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| 23041 | 3' | -54 | NC_005178.1 | + | 9580 | 0.66 | 0.685309 |
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Target: 5'- uGCGccgcGCUGCGCugGgcGGUcGCCg -3' miRNA: 3'- -CGCcuauCGACGCGugCuuCUA-CGGg -5' |
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| 23041 | 3' | -54 | NC_005178.1 | + | 24796 | 0.66 | 0.696565 |
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Target: 5'- gGUGGGUgAGCUGCuCuuCGAAGGUcaGCUCg -3' miRNA: 3'- -CGCCUA-UCGACGcGu-GCUUCUA--CGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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