Results 21 - 37 of 37 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23041 | 5' | -61.5 | NC_005178.1 | + | 19970 | 0.68 | 0.208521 |
Target: 5'- aCU-GGCggCAUCGaUCCGCCaGCCcGGCa -3' miRNA: 3'- -GAcCCGaaGUAGC-GGGCGG-CGGaCCG- -5' |
|||||||
23041 | 5' | -61.5 | NC_005178.1 | + | 20020 | 0.66 | 0.276687 |
Target: 5'- --cGGCcagcCcgCGCCCGCUGCC-GGCc -3' miRNA: 3'- gacCCGaa--GuaGCGGGCGGCGGaCCG- -5' |
|||||||
23041 | 5' | -61.5 | NC_005178.1 | + | 22344 | 1.11 | 0.000097 |
Target: 5'- gCUGGGCUUCAUCGCCCGCCGCCUGGCg -3' miRNA: 3'- -GACCCGAAGUAGCGGGCGGCGGACCG- -5' |
|||||||
23041 | 5' | -61.5 | NC_005178.1 | + | 22566 | 0.66 | 0.313132 |
Target: 5'- cCUGGGUgUCGUUGUCCGaCGCggacGGCu -3' miRNA: 3'- -GACCCGaAGUAGCGGGCgGCGga--CCG- -5' |
|||||||
23041 | 5' | -61.5 | NC_005178.1 | + | 23447 | 0.73 | 0.091696 |
Target: 5'- gCUGGGUgaccgUCugaAUCGCCCgacuGCCGCcCUGGUg -3' miRNA: 3'- -GACCCGa----AG---UAGCGGG----CGGCG-GACCG- -5' |
|||||||
23041 | 5' | -61.5 | NC_005178.1 | + | 23519 | 0.69 | 0.182631 |
Target: 5'- --cGGCUUCG-CGCCgGgCGCcCUGGCc -3' miRNA: 3'- gacCCGAAGUaGCGGgCgGCG-GACCG- -5' |
|||||||
23041 | 5' | -61.5 | NC_005178.1 | + | 24149 | 0.69 | 0.182631 |
Target: 5'- -cGGGCgaggUAcUC-CCCGCCGaCCUGGUg -3' miRNA: 3'- gaCCCGaa--GU-AGcGGGCGGC-GGACCG- -5' |
|||||||
23041 | 5' | -61.5 | NC_005178.1 | + | 24202 | 0.66 | 0.3162 |
Target: 5'- -gGGGaguaccucgcccgUCAcggaGCCCGCCGCCUuGGUc -3' miRNA: 3'- gaCCCga-----------AGUag--CGGGCGGCGGA-CCG- -5' |
|||||||
23041 | 5' | -61.5 | NC_005178.1 | + | 24979 | 0.81 | 0.022942 |
Target: 5'- -aGGGUUUUuUCGUCCGCCGCCUguGGCg -3' miRNA: 3'- gaCCCGAAGuAGCGGGCGGCGGA--CCG- -5' |
|||||||
23041 | 5' | -61.5 | NC_005178.1 | + | 26129 | 0.69 | 0.182631 |
Target: 5'- -cGGGCgaUGUCGUCCagGCCGUcgCUGGCg -3' miRNA: 3'- gaCCCGaaGUAGCGGG--CGGCG--GACCG- -5' |
|||||||
23041 | 5' | -61.5 | NC_005178.1 | + | 26724 | 0.66 | 0.283695 |
Target: 5'- -aGGGUgcccagguucUCGacgaucuggcUCGCCCGCUcguccauuGCCUGGCu -3' miRNA: 3'- gaCCCGa---------AGU----------AGCGGGCGG--------CGGACCG- -5' |
|||||||
23041 | 5' | -61.5 | NC_005178.1 | + | 27177 | 0.67 | 0.250033 |
Target: 5'- --aGGCgUUCGUCGUUCggguuaGCCGCCUGGa -3' miRNA: 3'- gacCCG-AAGUAGCGGG------CGGCGGACCg -5' |
|||||||
23041 | 5' | -61.5 | NC_005178.1 | + | 28543 | 0.69 | 0.192628 |
Target: 5'- aCUGGGCgggggcCGUcCGCCgCGCCaCCgggGGCg -3' miRNA: 3'- -GACCCGaa----GUA-GCGG-GCGGcGGa--CCG- -5' |
|||||||
23041 | 5' | -61.5 | NC_005178.1 | + | 30539 | 0.67 | 0.243709 |
Target: 5'- -cGGGCUgugcaaCAUgGCCUuCCucgcGCCUGGCg -3' miRNA: 3'- gaCCCGAa-----GUAgCGGGcGG----CGGACCG- -5' |
|||||||
23041 | 5' | -61.5 | NC_005178.1 | + | 34853 | 0.67 | 0.250033 |
Target: 5'- -cGGGCUggAUucCGCCCGaccggaCGCCUcgGGCg -3' miRNA: 3'- gaCCCGAagUA--GCGGGCg-----GCGGA--CCG- -5' |
|||||||
23041 | 5' | -61.5 | NC_005178.1 | + | 35255 | 0.66 | 0.313132 |
Target: 5'- -cGGaCUaucUCAUCGUCCacgacuGCgGCCUGGCc -3' miRNA: 3'- gaCCcGA---AGUAGCGGG------CGgCGGACCG- -5' |
|||||||
23041 | 5' | -61.5 | NC_005178.1 | + | 36395 | 0.68 | 0.214065 |
Target: 5'- --cGGCga-AUCGUCCGCUGUCgGGCa -3' miRNA: 3'- gacCCGaagUAGCGGGCGGCGGaCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home