miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23042 5' -66.4 NC_005178.1 + 19469 0.66 0.162403
Target:  5'- gAGCAGCuCGGCUGcGCgccguuGGCugauGCCGGCu -3'
miRNA:   3'- -UCGUCG-GCCGGCuCG------UCGcc--CGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 19862 0.69 0.100139
Target:  5'- gGGgAGCUGGaaaGAGCAGCGGcGauGGCa -3'
miRNA:   3'- -UCgUCGGCCgg-CUCGUCGCC-CggCCG- -5'
23042 5' -66.4 NC_005178.1 + 20084 0.78 0.017037
Target:  5'- -aCGGCCGGCagCGGGC-GCGGGCUGGCc -3'
miRNA:   3'- ucGUCGGCCG--GCUCGuCGCCCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 20470 0.7 0.077975
Target:  5'- cGCAGCuUGGCCagguuggucgccuGGGCGuccaGGGCCGGCu -3'
miRNA:   3'- uCGUCG-GCCGG-------------CUCGUcg--CCCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 20547 0.68 0.114729
Target:  5'- gGGCGGCgaccuuCaGCUGGGCGGUGGcGgCGGCg -3'
miRNA:   3'- -UCGUCG------GcCGGCUCGUCGCC-CgGCCG- -5'
23042 5' -66.4 NC_005178.1 + 20881 0.68 0.121104
Target:  5'- cGGCuugaucuGCaUGGCCGAGCAaaccGCGaGGgCGGCc -3'
miRNA:   3'- -UCGu------CG-GCCGGCUCGU----CGC-CCgGCCG- -5'
23042 5' -66.4 NC_005178.1 + 21092 0.66 0.154051
Target:  5'- cGCGGCCcagguaggucaGGCCG-GUGGCGGuGCugccgcccaCGGCg -3'
miRNA:   3'- uCGUCGG-----------CCGGCuCGUCGCC-CG---------GCCG- -5'
23042 5' -66.4 NC_005178.1 + 21284 0.86 0.003947
Target:  5'- uGCGGCCGGCCGGGgAGCGGGUuuCGGUg -3'
miRNA:   3'- uCGUCGGCCGGCUCgUCGCCCG--GCCG- -5'
23042 5' -66.4 NC_005178.1 + 22985 0.66 0.154051
Target:  5'- cAGCGGCa-GCUG-GUAGCGGGCgugcaGGUg -3'
miRNA:   3'- -UCGUCGgcCGGCuCGUCGCCCGg----CCG- -5'
23042 5' -66.4 NC_005178.1 + 23470 0.69 0.087311
Target:  5'- cGGCgcgaAGCCGGCCc-GCuGCucGGCCGGCu -3'
miRNA:   3'- -UCG----UCGGCCGGcuCGuCGc-CCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 23542 1.1 0.000042
Target:  5'- gAGCAGCCGGCCGAGCAGCGGGCCGGCu -3'
miRNA:   3'- -UCGUCGGCCGGCUCGUCGCCCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 23611 0.68 0.108669
Target:  5'- uGGCgaAGCCuG-CGGGCuGCGGGCCaGCg -3'
miRNA:   3'- -UCG--UCGGcCgGCUCGuCGCCCGGcCG- -5'
23042 5' -66.4 NC_005178.1 + 24395 0.68 0.11166
Target:  5'- aGGCcGCuuugaaCGGCUGGGUcG-GGGCCGGCg -3'
miRNA:   3'- -UCGuCG------GCCGGCUCGuCgCCCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 24429 0.7 0.076057
Target:  5'- gGGCAucaacCUGGCCGAagGCGGCGcGCCGGUc -3'
miRNA:   3'- -UCGUc----GGCCGGCU--CGUCGCcCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 25602 0.72 0.055993
Target:  5'- uGCAGCCGaGCaaCGAGCGGcCGaGGCugCGGCg -3'
miRNA:   3'- uCGUCGGC-CG--GCUCGUC-GC-CCG--GCCG- -5'
23042 5' -66.4 NC_005178.1 + 25657 0.7 0.076057
Target:  5'- cGGCAGCaGGCCGAGC--UGGGCaaacugcucgCGGCc -3'
miRNA:   3'- -UCGUCGgCCGGCUCGucGCCCG----------GCCG- -5'
23042 5' -66.4 NC_005178.1 + 26183 0.68 0.121104
Target:  5'- cGCGGCggUGGCC--GCuGCGGGCgUGGCg -3'
miRNA:   3'- uCGUCG--GCCGGcuCGuCGCCCG-GCCG- -5'
23042 5' -66.4 NC_005178.1 + 27316 0.68 0.108374
Target:  5'- cAGCGcGCCGGCCuacuGAGCuauGCGGacuaugucgcgcaGCgCGGCg -3'
miRNA:   3'- -UCGU-CGGCCGG----CUCGu--CGCC-------------CG-GCCG- -5'
23042 5' -66.4 NC_005178.1 + 28237 0.67 0.124414
Target:  5'- gGGC-GCCGGCCGA--GGCGGauacaGCCgaGGCg -3'
miRNA:   3'- -UCGuCGGCCGGCUcgUCGCC-----CGG--CCG- -5'
23042 5' -66.4 NC_005178.1 + 28297 0.69 0.100139
Target:  5'- aGGCGGCagCGGCCuggauAGCGGCGGcGCC-GCu -3'
miRNA:   3'- -UCGUCG--GCCGGc----UCGUCGCC-CGGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.