miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23042 5' -66.4 NC_005178.1 + 9081 0.67 0.131286
Target:  5'- aGGUcgaAGCCGGCaacGGC-GCGGaGUCGGCu -3'
miRNA:   3'- -UCG---UCGGCCGgc-UCGuCGCC-CGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 10292 0.69 0.089745
Target:  5'- gAGCAGCuCGGCgGcacguccuGGCGGauagccgaGGGCCGGg -3'
miRNA:   3'- -UCGUCG-GCCGgC--------UCGUCg-------CCCGGCCg -5'
23042 5' -66.4 NC_005178.1 + 10350 0.7 0.076904
Target:  5'- aGGaCGuGCC-GCCGAGCugcucgacuaccaccAGCGuGGCCGGCa -3'
miRNA:   3'- -UC-GU-CGGcCGGCUCG---------------UCGC-CCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 10356 0.74 0.03569
Target:  5'- gGGCugcGCUGGCCGAGCuGGUGGGCa-GCg -3'
miRNA:   3'- -UCGu--CGGCCGGCUCG-UCGCCCGgcCG- -5'
23042 5' -66.4 NC_005178.1 + 10709 0.66 0.166293
Target:  5'- cGGCGcggagacGCCGGCCgGGGCGuuGCGccCCGGCu -3'
miRNA:   3'- -UCGU-------CGGCCGG-CUCGU--CGCccGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 11148 0.73 0.04473
Target:  5'- cGCuGCCGGCCGAGguggauGCGGGaucaGGCa -3'
miRNA:   3'- uCGuCGGCCGGCUCgu----CGCCCgg--CCG- -5'
23042 5' -66.4 NC_005178.1 + 11839 0.68 0.117558
Target:  5'- uGCAgGCCGGCCugcGGCGGaacccccauggcuCGGGCCacGGCc -3'
miRNA:   3'- uCGU-CGGCCGGc--UCGUC-------------GCCCGG--CCG- -5'
23042 5' -66.4 NC_005178.1 + 11862 0.71 0.062613
Target:  5'- cAGCAGCCcuacagcGCCGAGCAGaucgcccaGGCCGuGCg -3'
miRNA:   3'- -UCGUCGGc------CGGCUCGUCgc------CCGGC-CG- -5'
23042 5' -66.4 NC_005178.1 + 11978 0.66 0.162403
Target:  5'- -cCGGCCuaGCCcuGguGCGGGCUGGUa -3'
miRNA:   3'- ucGUCGGc-CGGcuCguCGCCCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 12083 0.69 0.094807
Target:  5'- cAGC-GCCuGGUgGAGUggucgcguGGCGGGCCuGGCc -3'
miRNA:   3'- -UCGuCGG-CCGgCUCG--------UCGCCCGG-CCG- -5'
23042 5' -66.4 NC_005178.1 + 12657 0.7 0.080382
Target:  5'- cGGCGGCCGGCgCGcuGGCGG-GuGGCCuGGUu -3'
miRNA:   3'- -UCGUCGGCCG-GC--UCGUCgC-CCGG-CCG- -5'
23042 5' -66.4 NC_005178.1 + 12907 0.73 0.043488
Target:  5'- cGCAguuGCUGGCCG-GUGGUGGGCUGGa -3'
miRNA:   3'- uCGU---CGGCCGGCuCGUCGCCCGGCCg -5'
23042 5' -66.4 NC_005178.1 + 13092 0.66 0.16673
Target:  5'- cGGCcaGGCUGGCC-AGCAGCugcaccuucacGGCgGGCu -3'
miRNA:   3'- -UCG--UCGGCCGGcUCGUCGc----------CCGgCCG- -5'
23042 5' -66.4 NC_005178.1 + 15484 0.66 0.169376
Target:  5'- cAGCAGCUGcGCa-AGCAGCagaccgcgcaccuGGCCGGUc -3'
miRNA:   3'- -UCGUCGGC-CGgcUCGUCGc------------CCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 15571 0.68 0.104892
Target:  5'- aAGCuGGCUcacauccugaucgaGGCCGAGCAG-GGGCaccuccaGGCu -3'
miRNA:   3'- -UCG-UCGG--------------CCGGCUCGUCgCCCGg------CCG- -5'
23042 5' -66.4 NC_005178.1 + 16607 0.66 0.161976
Target:  5'- aGGuCGGCCcgguccuugaGGUCGAagaccagGCGGgGGGCgCGGCg -3'
miRNA:   3'- -UC-GUCGG----------CCGGCU-------CGUCgCCCG-GCCG- -5'
23042 5' -66.4 NC_005178.1 + 16883 0.7 0.078191
Target:  5'- aGGUAGCgaGGCCGAGCugcucGGCGcccuGGCCgaGGCa -3'
miRNA:   3'- -UCGUCGg-CCGGCUCG-----UCGC----CCGG--CCG- -5'
23042 5' -66.4 NC_005178.1 + 16898 0.67 0.134132
Target:  5'- gAGCGGCgcgaccaggcuauCGGCCuGGUuuuGCauguccuGGGCCGGCa -3'
miRNA:   3'- -UCGUCG-------------GCCGGcUCGu--CG-------CCCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 17408 0.68 0.108669
Target:  5'- -cCAGCCGGCgCGGGCugccgAGCuGGGCgaccuCGGCc -3'
miRNA:   3'- ucGUCGGCCG-GCUCG-----UCG-CCCG-----GCCG- -5'
23042 5' -66.4 NC_005178.1 + 18184 0.7 0.080382
Target:  5'- uGGCGGuUCGGCUGcGCGGUggcgucuauGGGCCGGg -3'
miRNA:   3'- -UCGUC-GGCCGGCuCGUCG---------CCCGGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.