miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23042 5' -66.4 NC_005178.1 + 819 0.68 0.11166
Target:  5'- -aUAGCCGG-CGAGCauuggcgaAGCaGGUCGGCa -3'
miRNA:   3'- ucGUCGGCCgGCUCG--------UCGcCCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 1517 0.66 0.161125
Target:  5'- gGGCGGCguaguugcacucacCaGGUauAGC-GCGGGCCGGCu -3'
miRNA:   3'- -UCGUCG--------------G-CCGgcUCGuCGCCCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 2764 0.7 0.082403
Target:  5'- cAGCAGCgCGGCgCGGGUuuccuucGGCaGGGCCGa- -3'
miRNA:   3'- -UCGUCG-GCCG-GCUCG-------UCG-CCCGGCcg -5'
23042 5' -66.4 NC_005178.1 + 2925 0.67 0.144929
Target:  5'- gAGCGuuuCCGGCUGuAGCcgguGCGGGCCaucaucaggucuagGGCg -3'
miRNA:   3'- -UCGUc--GGCCGGC-UCGu---CGCCCGG--------------CCG- -5'
23042 5' -66.4 NC_005178.1 + 2972 0.71 0.062613
Target:  5'- cGCGGCCGcCCGAGC-GCGGauggcuGCCGaGCg -3'
miRNA:   3'- uCGUCGGCcGGCUCGuCGCC------CGGC-CG- -5'
23042 5' -66.4 NC_005178.1 + 3433 0.71 0.062613
Target:  5'- cGGCcggaagGGCCGGCCGuGCAuCGGGUgcuggaccuCGGCg -3'
miRNA:   3'- -UCG------UCGGCCGGCuCGUcGCCCG---------GCCG- -5'
23042 5' -66.4 NC_005178.1 + 3938 0.66 0.15776
Target:  5'- cGGCGGCCGGUguucgggucaaCGAugcgcggcaagcuGCuGUGcGGCCGGUc -3'
miRNA:   3'- -UCGUCGGCCG-----------GCU-------------CGuCGC-CCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 4506 0.73 0.042279
Target:  5'- uGCgAGCUGGCCGAGCGGCaacgcuCCGGCc -3'
miRNA:   3'- uCG-UCGGCCGGCUCGUCGccc---GGCCG- -5'
23042 5' -66.4 NC_005178.1 + 4519 0.66 0.150023
Target:  5'- gAGCGGUCGGCaGGGUgaagaccugGGCGGuGgUGGCu -3'
miRNA:   3'- -UCGUCGGCCGgCUCG---------UCGCC-CgGCCG- -5'
23042 5' -66.4 NC_005178.1 + 4597 0.66 0.17116
Target:  5'- gGGCGGCgucCGGCuCGAugGGCaGGCCGGa -3'
miRNA:   3'- -UCGUCG---GCCG-GCUcgUCGcCCGGCCg -5'
23042 5' -66.4 NC_005178.1 + 4835 0.68 0.121104
Target:  5'- aGGCGGCCGaaacggauuuGCCGaAGcCGGaCGGGCCGuagaaGCa -3'
miRNA:   3'- -UCGUCGGC----------CGGC-UC-GUC-GCCCGGC-----CG- -5'
23042 5' -66.4 NC_005178.1 + 5002 0.67 0.131286
Target:  5'- cAGCGGgCGGCCGcuGGCggccaguuccucGGCGaucuGGUCGGCc -3'
miRNA:   3'- -UCGUCgGCCGGC--UCG------------UCGC----CCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 5266 0.8 0.012439
Target:  5'- gAGCAGuuGGCCGAgGCcGCcaccguucaGGGCCGGCg -3'
miRNA:   3'- -UCGUCggCCGGCU-CGuCG---------CCCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 5924 0.76 0.026125
Target:  5'- gGGCGGCCgagGGCCGGuGUAGCGGcCUGGCu -3'
miRNA:   3'- -UCGUCGG---CCGGCU-CGUCGCCcGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 7088 0.73 0.047319
Target:  5'- aGGCGGUgaccuCGGUCGAguGCAGCGaguaccuccagcGGCCGGCg -3'
miRNA:   3'- -UCGUCG-----GCCGGCU--CGUCGC------------CCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 7203 0.67 0.124414
Target:  5'- cAGCAGCgCaucgcgacggGGuuGuuCAGCGGcGCCGGCc -3'
miRNA:   3'- -UCGUCG-G----------CCggCucGUCGCC-CGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 7352 0.66 0.16673
Target:  5'- gAGCAGCCGGgCGgcgucguugaAGguGCGcaGGCUcugGGCc -3'
miRNA:   3'- -UCGUCGGCCgGC----------UCguCGC--CCGG---CCG- -5'
23042 5' -66.4 NC_005178.1 + 7485 0.66 0.154051
Target:  5'- uGCuGCCGGCCGAgGCGuCGcGCUGGa -3'
miRNA:   3'- uCGuCGGCCGGCU-CGUcGCcCGGCCg -5'
23042 5' -66.4 NC_005178.1 + 8665 0.66 0.16673
Target:  5'- --uGGCCGGagacuuCCGGcgagcgcgugguGCAGUugGGGCCGGCu -3'
miRNA:   3'- ucgUCGGCC------GGCU------------CGUCG--CCCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 9046 0.66 0.150023
Target:  5'- gAGCAauGCCGcGCCGcGCucGCGGucaCCGGCc -3'
miRNA:   3'- -UCGU--CGGC-CGGCuCGu-CGCCc--GGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.