miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23042 5' -66.4 NC_005178.1 + 30795 0.69 0.094807
Target:  5'- uGGCAG-CGGUC--GCGGCcucgaccuGGGCCGGCg -3'
miRNA:   3'- -UCGUCgGCCGGcuCGUCG--------CCCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 24429 0.7 0.076057
Target:  5'- gGGCAucaacCUGGCCGAagGCGGCGcGCCGGUc -3'
miRNA:   3'- -UCGUc----GGCCGGCU--CGUCGCcCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 16883 0.7 0.078191
Target:  5'- aGGUAGCgaGGCCGAGCugcucGGCGcccuGGCCgaGGCa -3'
miRNA:   3'- -UCGUCGg-CCGGCUCG-----UCGC----CCGG--CCG- -5'
23042 5' -66.4 NC_005178.1 + 33895 0.7 0.078191
Target:  5'- gGGCGuccuGCCGcGCCuGGCGGCGaugcucggcGGCCGGUg -3'
miRNA:   3'- -UCGU----CGGC-CGGcUCGUCGC---------CCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 18184 0.7 0.080382
Target:  5'- uGGCGGuUCGGCUGcGCGGUggcgucuauGGGCCGGg -3'
miRNA:   3'- -UCGUC-GGCCGGCuCGUCG---------CCCGGCCg -5'
23042 5' -66.4 NC_005178.1 + 12657 0.7 0.080382
Target:  5'- cGGCGGCCGGCgCGcuGGCGG-GuGGCCuGGUu -3'
miRNA:   3'- -UCGUCGGCCG-GC--UCGUCgC-CCGG-CCG- -5'
23042 5' -66.4 NC_005178.1 + 23470 0.69 0.087311
Target:  5'- cGGCgcgaAGCCGGCCc-GCuGCucGGCCGGCu -3'
miRNA:   3'- -UCG----UCGGCCGGcuCGuCGc-CCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 10292 0.69 0.089745
Target:  5'- gAGCAGCuCGGCgGcacguccuGGCGGauagccgaGGGCCGGg -3'
miRNA:   3'- -UCGUCG-GCCGgC--------UCGUCg-------CCCGGCCg -5'
23042 5' -66.4 NC_005178.1 + 31940 0.69 0.092243
Target:  5'- cGGCA-UgGGCCGAGCcgAGCGG-UCGGCg -3'
miRNA:   3'- -UCGUcGgCCGGCUCG--UCGCCcGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 25657 0.7 0.076057
Target:  5'- cGGCAGCaGGCCGAGC--UGGGCaaacugcucgCGGCc -3'
miRNA:   3'- -UCGUCGgCCGGCUCGucGCCCG----------GCCG- -5'
23042 5' -66.4 NC_005178.1 + 32898 0.7 0.071757
Target:  5'- cAGCGGCUGGgUGAucucCAGCGGcguggucGCCGGCa -3'
miRNA:   3'- -UCGUCGGCCgGCUc---GUCGCC-------CGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 28706 0.71 0.068068
Target:  5'- -cCAGauggCGGCCGA-CAuGUGGGCCGGCa -3'
miRNA:   3'- ucGUCg---GCCGGCUcGU-CGCCCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 37508 0.75 0.029268
Target:  5'- gAGCAGCuCGGCCGAuuccuGCGGgaGGGCauCGGCa -3'
miRNA:   3'- -UCGUCG-GCCGGCU-----CGUCg-CCCG--GCCG- -5'
23042 5' -66.4 NC_005178.1 + 10356 0.74 0.03569
Target:  5'- gGGCugcGCUGGCCGAGCuGGUGGGCa-GCg -3'
miRNA:   3'- -UCGu--CGGCCGGCUCG-UCGCCCGgcCG- -5'
23042 5' -66.4 NC_005178.1 + 4506 0.73 0.042279
Target:  5'- uGCgAGCUGGCCGAGCGGCaacgcuCCGGCc -3'
miRNA:   3'- uCG-UCGGCCGGCUCGUCGccc---GGCCG- -5'
23042 5' -66.4 NC_005178.1 + 12907 0.73 0.043488
Target:  5'- cGCAguuGCUGGCCG-GUGGUGGGCUGGa -3'
miRNA:   3'- uCGU---CGGCCGGCuCGUCGCCCGGCCg -5'
23042 5' -66.4 NC_005178.1 + 7088 0.73 0.047319
Target:  5'- aGGCGGUgaccuCGGUCGAguGCAGCGaguaccuccagcGGCCGGCg -3'
miRNA:   3'- -UCGUCG-----GCCGGCU--CGUCGC------------CCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 25602 0.72 0.055993
Target:  5'- uGCAGCCGaGCaaCGAGCGGcCGaGGCugCGGCg -3'
miRNA:   3'- uCGUCGGC-CG--GCUCGUC-GC-CCG--GCCG- -5'
23042 5' -66.4 NC_005178.1 + 11862 0.71 0.062613
Target:  5'- cAGCAGCCcuacagcGCCGAGCAGaucgcccaGGCCGuGCg -3'
miRNA:   3'- -UCGUCGGc------CGGCUCGUCgc------CCGGC-CG- -5'
23042 5' -66.4 NC_005178.1 + 2972 0.71 0.062613
Target:  5'- cGCGGCCGcCCGAGC-GCGGauggcuGCCGaGCg -3'
miRNA:   3'- uCGUCGGCcGGCUCGuCGCC------CGGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.