miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23042 5' -66.4 NC_005178.1 + 23542 1.1 0.000042
Target:  5'- gAGCAGCCGGCCGAGCAGCGGGCCGGCu -3'
miRNA:   3'- -UCGUCGGCCGGCUCGUCGCCCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 17408 0.68 0.108669
Target:  5'- -cCAGCCGGCgCGGGCugccgAGCuGGGCgaccuCGGCc -3'
miRNA:   3'- ucGUCGGCCG-GCUCG-----UCG-CCCG-----GCCG- -5'
23042 5' -66.4 NC_005178.1 + 819 0.68 0.11166
Target:  5'- -aUAGCCGG-CGAGCauuggcgaAGCaGGUCGGCa -3'
miRNA:   3'- ucGUCGGCCgGCUCG--------UCGcCCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 4597 0.66 0.17116
Target:  5'- gGGCGGCgucCGGCuCGAugGGCaGGCCGGa -3'
miRNA:   3'- -UCGUCG---GCCG-GCUcgUCGcCCGGCCg -5'
23042 5' -66.4 NC_005178.1 + 11148 0.73 0.04473
Target:  5'- cGCuGCCGGCCGAGguggauGCGGGaucaGGCa -3'
miRNA:   3'- uCGuCGGCCGGCUCgu----CGCCCgg--CCG- -5'
23042 5' -66.4 NC_005178.1 + 35232 0.72 0.054295
Target:  5'- uGCGGCCuGGCCGA-CAGUGacguccuccagccGGCUGGCg -3'
miRNA:   3'- uCGUCGG-CCGGCUcGUCGC-------------CCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 31551 0.71 0.067502
Target:  5'- aAGUcgaGGCCGGCCGuGUcgcacggaauguucAGCGaGCCGGCc -3'
miRNA:   3'- -UCG---UCGGCCGGCuCG--------------UCGCcCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 10350 0.7 0.076904
Target:  5'- aGGaCGuGCC-GCCGAGCugcucgacuaccaccAGCGuGGCCGGCa -3'
miRNA:   3'- -UC-GU-CGGcCGGCUCG---------------UCGC-CCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 33345 0.7 0.08494
Target:  5'- aGGCGGUCGGCuUGGGCuucuGCGGcuUCGGCg -3'
miRNA:   3'- -UCGUCGGCCG-GCUCGu---CGCCc-GGCCG- -5'
23042 5' -66.4 NC_005178.1 + 33546 0.68 0.108669
Target:  5'- cAGUAGCCcuGUCGAGUGGUccaGGUCGGCa -3'
miRNA:   3'- -UCGUCGGc-CGGCUCGUCGc--CCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 19862 0.69 0.100139
Target:  5'- gGGgAGCUGGaaaGAGCAGCGGcGauGGCa -3'
miRNA:   3'- -UCgUCGGCCgg-CUCGUCGCC-CggCCG- -5'
23042 5' -66.4 NC_005178.1 + 2764 0.7 0.082403
Target:  5'- cAGCAGCgCGGCgCGGGUuuccuucGGCaGGGCCGa- -3'
miRNA:   3'- -UCGUCG-GCCG-GCUCG-------UCG-CCCGGCcg -5'
23042 5' -66.4 NC_005178.1 + 21284 0.86 0.003947
Target:  5'- uGCGGCCGGCCGGGgAGCGGGUuuCGGUg -3'
miRNA:   3'- uCGUCGGCCGGCUCgUCGCCCG--GCCG- -5'
23042 5' -66.4 NC_005178.1 + 37257 0.68 0.104892
Target:  5'- cGGUAGCgauggcgucaaacuCGGCCuccaGGcGCAGCGGGUCGGa -3'
miRNA:   3'- -UCGUCG--------------GCCGG----CU-CGUCGCCCGGCCg -5'
23042 5' -66.4 NC_005178.1 + 20084 0.78 0.017037
Target:  5'- -aCGGCCGGCagCGGGC-GCGGGCUGGCc -3'
miRNA:   3'- ucGUCGGCCG--GCUCGuCGCCCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 20470 0.7 0.077975
Target:  5'- cGCAGCuUGGCCagguuggucgccuGGGCGuccaGGGCCGGCu -3'
miRNA:   3'- uCGUCG-GCCGG-------------CUCGUcg--CCCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 23611 0.68 0.108669
Target:  5'- uGGCgaAGCCuG-CGGGCuGCGGGCCaGCg -3'
miRNA:   3'- -UCG--UCGGcCgGCUCGuCGCCCGGcCG- -5'
23042 5' -66.4 NC_005178.1 + 24395 0.68 0.11166
Target:  5'- aGGCcGCuuugaaCGGCUGGGUcG-GGGCCGGCg -3'
miRNA:   3'- -UCGuCG------GCCGGCUCGuCgCCCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 5924 0.76 0.026125
Target:  5'- gGGCGGCCgagGGCCGGuGUAGCGGcCUGGCu -3'
miRNA:   3'- -UCGUCGG---CCGGCU-CGUCGCCcGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 3433 0.71 0.062613
Target:  5'- cGGCcggaagGGCCGGCCGuGCAuCGGGUgcuggaccuCGGCg -3'
miRNA:   3'- -UCG------UCGGCCGGCuCGUcGCCCG---------GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.