miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23042 5' -66.4 NC_005178.1 + 23542 1.1 0.000042
Target:  5'- gAGCAGCCGGCCGAGCAGCGGGCCGGCu -3'
miRNA:   3'- -UCGUCGGCCGGCUCGUCGCCCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 21284 0.86 0.003947
Target:  5'- uGCGGCCGGCCGGGgAGCGGGUuuCGGUg -3'
miRNA:   3'- uCGUCGGCCGGCUCgUCGCCCG--GCCG- -5'
23042 5' -66.4 NC_005178.1 + 5266 0.8 0.012439
Target:  5'- gAGCAGuuGGCCGAgGCcGCcaccguucaGGGCCGGCg -3'
miRNA:   3'- -UCGUCggCCGGCU-CGuCG---------CCCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 20084 0.78 0.017037
Target:  5'- -aCGGCCGGCagCGGGC-GCGGGCUGGCc -3'
miRNA:   3'- ucGUCGGCCG--GCUCGuCGCCCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 5924 0.76 0.026125
Target:  5'- gGGCGGCCgagGGCCGGuGUAGCGGcCUGGCu -3'
miRNA:   3'- -UCGUCGG---CCGGCU-CGUCGCCcGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 37508 0.75 0.029268
Target:  5'- gAGCAGCuCGGCCGAuuccuGCGGgaGGGCauCGGCa -3'
miRNA:   3'- -UCGUCG-GCCGGCU-----CGUCg-CCCG--GCCG- -5'
23042 5' -66.4 NC_005178.1 + 10356 0.74 0.03569
Target:  5'- gGGCugcGCUGGCCGAGCuGGUGGGCa-GCg -3'
miRNA:   3'- -UCGu--CGGCCGGCUCG-UCGCCCGgcCG- -5'
23042 5' -66.4 NC_005178.1 + 4506 0.73 0.042279
Target:  5'- uGCgAGCUGGCCGAGCGGCaacgcuCCGGCc -3'
miRNA:   3'- uCG-UCGGCCGGCUCGUCGccc---GGCCG- -5'
23042 5' -66.4 NC_005178.1 + 12907 0.73 0.043488
Target:  5'- cGCAguuGCUGGCCG-GUGGUGGGCUGGa -3'
miRNA:   3'- uCGU---CGGCCGGCuCGUCGCCCGGCCg -5'
23042 5' -66.4 NC_005178.1 + 11148 0.73 0.04473
Target:  5'- cGCuGCCGGCCGAGguggauGCGGGaucaGGCa -3'
miRNA:   3'- uCGuCGGCCGGCUCgu----CGCCCgg--CCG- -5'
23042 5' -66.4 NC_005178.1 + 7088 0.73 0.047319
Target:  5'- aGGCGGUgaccuCGGUCGAguGCAGCGaguaccuccagcGGCCGGCg -3'
miRNA:   3'- -UCGUCG-----GCCGGCU--CGUCGC------------CCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 35232 0.72 0.054295
Target:  5'- uGCGGCCuGGCCGA-CAGUGacguccuccagccGGCUGGCg -3'
miRNA:   3'- uCGUCGG-CCGGCUcGUCGC-------------CCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 25602 0.72 0.055993
Target:  5'- uGCAGCCGaGCaaCGAGCGGcCGaGGCugCGGCg -3'
miRNA:   3'- uCGUCGGC-CG--GCUCGUC-GC-CCG--GCCG- -5'
23042 5' -66.4 NC_005178.1 + 2972 0.71 0.062613
Target:  5'- cGCGGCCGcCCGAGC-GCGGauggcuGCCGaGCg -3'
miRNA:   3'- uCGUCGGCcGGCUCGuCGCC------CGGC-CG- -5'
23042 5' -66.4 NC_005178.1 + 3433 0.71 0.062613
Target:  5'- cGGCcggaagGGCCGGCCGuGCAuCGGGUgcuggaccuCGGCg -3'
miRNA:   3'- -UCG------UCGGCCGGCuCGUcGCCCG---------GCCG- -5'
23042 5' -66.4 NC_005178.1 + 11862 0.71 0.062613
Target:  5'- cAGCAGCCcuacagcGCCGAGCAGaucgcccaGGCCGuGCg -3'
miRNA:   3'- -UCGUCGGc------CGGCUCGUCgc------CCGGC-CG- -5'
23042 5' -66.4 NC_005178.1 + 31551 0.71 0.067502
Target:  5'- aAGUcgaGGCCGGCCGuGUcgcacggaauguucAGCGaGCCGGCc -3'
miRNA:   3'- -UCG---UCGGCCGGCuCG--------------UCGCcCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 28706 0.71 0.068068
Target:  5'- -cCAGauggCGGCCGA-CAuGUGGGCCGGCa -3'
miRNA:   3'- ucGUCg---GCCGGCUcGU-CGCCCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 32898 0.7 0.071757
Target:  5'- cAGCGGCUGGgUGAucucCAGCGGcguggucGCCGGCa -3'
miRNA:   3'- -UCGUCGGCCgGCUc---GUCGCC-------CGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 24429 0.7 0.076057
Target:  5'- gGGCAucaacCUGGCCGAagGCGGCGcGCCGGUc -3'
miRNA:   3'- -UCGUc----GGCCGGCU--CGUCGCcCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.