Results 1 - 20 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23042 | 5' | -66.4 | NC_005178.1 | + | 23542 | 1.1 | 4.2e-05 |
Target: 5'- gAGCAGCCGGCCGAGCAGCGGGCCGGCu -3' miRNA: 3'- -UCGUCGGCCGGCUCGUCGCCCGGCCG- -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 21284 | 0.86 | 0.003947 |
Target: 5'- uGCGGCCGGCCGGGgAGCGGGUuuCGGUg -3' miRNA: 3'- uCGUCGGCCGGCUCgUCGCCCG--GCCG- -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 5266 | 0.8 | 0.012439 |
Target: 5'- gAGCAGuuGGCCGAgGCcGCcaccguucaGGGCCGGCg -3' miRNA: 3'- -UCGUCggCCGGCU-CGuCG---------CCCGGCCG- -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 20084 | 0.78 | 0.017037 |
Target: 5'- -aCGGCCGGCagCGGGC-GCGGGCUGGCc -3' miRNA: 3'- ucGUCGGCCG--GCUCGuCGCCCGGCCG- -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 5924 | 0.76 | 0.026125 |
Target: 5'- gGGCGGCCgagGGCCGGuGUAGCGGcCUGGCu -3' miRNA: 3'- -UCGUCGG---CCGGCU-CGUCGCCcGGCCG- -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 37508 | 0.75 | 0.029268 |
Target: 5'- gAGCAGCuCGGCCGAuuccuGCGGgaGGGCauCGGCa -3' miRNA: 3'- -UCGUCG-GCCGGCU-----CGUCg-CCCG--GCCG- -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 10356 | 0.74 | 0.03569 |
Target: 5'- gGGCugcGCUGGCCGAGCuGGUGGGCa-GCg -3' miRNA: 3'- -UCGu--CGGCCGGCUCG-UCGCCCGgcCG- -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 4506 | 0.73 | 0.042279 |
Target: 5'- uGCgAGCUGGCCGAGCGGCaacgcuCCGGCc -3' miRNA: 3'- uCG-UCGGCCGGCUCGUCGccc---GGCCG- -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 12907 | 0.73 | 0.043488 |
Target: 5'- cGCAguuGCUGGCCG-GUGGUGGGCUGGa -3' miRNA: 3'- uCGU---CGGCCGGCuCGUCGCCCGGCCg -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 11148 | 0.73 | 0.04473 |
Target: 5'- cGCuGCCGGCCGAGguggauGCGGGaucaGGCa -3' miRNA: 3'- uCGuCGGCCGGCUCgu----CGCCCgg--CCG- -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 7088 | 0.73 | 0.047319 |
Target: 5'- aGGCGGUgaccuCGGUCGAguGCAGCGaguaccuccagcGGCCGGCg -3' miRNA: 3'- -UCGUCG-----GCCGGCU--CGUCGC------------CCGGCCG- -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 35232 | 0.72 | 0.054295 |
Target: 5'- uGCGGCCuGGCCGA-CAGUGacguccuccagccGGCUGGCg -3' miRNA: 3'- uCGUCGG-CCGGCUcGUCGC-------------CCGGCCG- -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 25602 | 0.72 | 0.055993 |
Target: 5'- uGCAGCCGaGCaaCGAGCGGcCGaGGCugCGGCg -3' miRNA: 3'- uCGUCGGC-CG--GCUCGUC-GC-CCG--GCCG- -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 11862 | 0.71 | 0.062613 |
Target: 5'- cAGCAGCCcuacagcGCCGAGCAGaucgcccaGGCCGuGCg -3' miRNA: 3'- -UCGUCGGc------CGGCUCGUCgc------CCGGC-CG- -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 2972 | 0.71 | 0.062613 |
Target: 5'- cGCGGCCGcCCGAGC-GCGGauggcuGCCGaGCg -3' miRNA: 3'- uCGUCGGCcGGCUCGuCGCC------CGGC-CG- -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 3433 | 0.71 | 0.062613 |
Target: 5'- cGGCcggaagGGCCGGCCGuGCAuCGGGUgcuggaccuCGGCg -3' miRNA: 3'- -UCG------UCGGCCGGCuCGUcGCCCG---------GCCG- -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 31551 | 0.71 | 0.067502 |
Target: 5'- aAGUcgaGGCCGGCCGuGUcgcacggaauguucAGCGaGCCGGCc -3' miRNA: 3'- -UCG---UCGGCCGGCuCG--------------UCGCcCGGCCG- -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 28706 | 0.71 | 0.068068 |
Target: 5'- -cCAGauggCGGCCGA-CAuGUGGGCCGGCa -3' miRNA: 3'- ucGUCg---GCCGGCUcGU-CGCCCGGCCG- -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 32898 | 0.7 | 0.071757 |
Target: 5'- cAGCGGCUGGgUGAucucCAGCGGcguggucGCCGGCa -3' miRNA: 3'- -UCGUCGGCCgGCUc---GUCGCC-------CGGCCG- -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 25657 | 0.7 | 0.076057 |
Target: 5'- cGGCAGCaGGCCGAGC--UGGGCaaacugcucgCGGCc -3' miRNA: 3'- -UCGUCGgCCGGCUCGucGCCCG----------GCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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