miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23042 5' -66.4 NC_005178.1 + 25657 0.7 0.076057
Target:  5'- cGGCAGCaGGCCGAGC--UGGGCaaacugcucgCGGCc -3'
miRNA:   3'- -UCGUCGgCCGGCUCGucGCCCG----------GCCG- -5'
23042 5' -66.4 NC_005178.1 + 10350 0.7 0.076904
Target:  5'- aGGaCGuGCC-GCCGAGCugcucgacuaccaccAGCGuGGCCGGCa -3'
miRNA:   3'- -UC-GU-CGGcCGGCUCG---------------UCGC-CCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 20470 0.7 0.077975
Target:  5'- cGCAGCuUGGCCagguuggucgccuGGGCGuccaGGGCCGGCu -3'
miRNA:   3'- uCGUCG-GCCGG-------------CUCGUcg--CCCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 16883 0.7 0.078191
Target:  5'- aGGUAGCgaGGCCGAGCugcucGGCGcccuGGCCgaGGCa -3'
miRNA:   3'- -UCGUCGg-CCGGCUCG-----UCGC----CCGG--CCG- -5'
23042 5' -66.4 NC_005178.1 + 33895 0.7 0.078191
Target:  5'- gGGCGuccuGCCGcGCCuGGCGGCGaugcucggcGGCCGGUg -3'
miRNA:   3'- -UCGU----CGGC-CGGcUCGUCGC---------CCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 18184 0.7 0.080382
Target:  5'- uGGCGGuUCGGCUGcGCGGUggcgucuauGGGCCGGg -3'
miRNA:   3'- -UCGUC-GGCCGGCuCGUCG---------CCCGGCCg -5'
23042 5' -66.4 NC_005178.1 + 12657 0.7 0.080382
Target:  5'- cGGCGGCCGGCgCGcuGGCGG-GuGGCCuGGUu -3'
miRNA:   3'- -UCGUCGGCCG-GC--UCGUCgC-CCGG-CCG- -5'
23042 5' -66.4 NC_005178.1 + 2764 0.7 0.082403
Target:  5'- cAGCAGCgCGGCgCGGGUuuccuucGGCaGGGCCGa- -3'
miRNA:   3'- -UCGUCG-GCCG-GCUCG-------UCG-CCCGGCcg -5'
23042 5' -66.4 NC_005178.1 + 33345 0.7 0.08494
Target:  5'- aGGCGGUCGGCuUGGGCuucuGCGGcuUCGGCg -3'
miRNA:   3'- -UCGUCGGCCG-GCUCGu---CGCCc-GGCCG- -5'
23042 5' -66.4 NC_005178.1 + 23470 0.69 0.087311
Target:  5'- cGGCgcgaAGCCGGCCc-GCuGCucGGCCGGCu -3'
miRNA:   3'- -UCG----UCGGCCGGcuCGuCGc-CCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 10292 0.69 0.089745
Target:  5'- gAGCAGCuCGGCgGcacguccuGGCGGauagccgaGGGCCGGg -3'
miRNA:   3'- -UCGUCG-GCCGgC--------UCGUCg-------CCCGGCCg -5'
23042 5' -66.4 NC_005178.1 + 31940 0.69 0.092243
Target:  5'- cGGCA-UgGGCCGAGCcgAGCGG-UCGGCg -3'
miRNA:   3'- -UCGUcGgCCGGCUCG--UCGCCcGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 30795 0.69 0.094807
Target:  5'- uGGCAG-CGGUC--GCGGCcucgaccuGGGCCGGCg -3'
miRNA:   3'- -UCGUCgGCCGGcuCGUCG--------CCCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 12083 0.69 0.094807
Target:  5'- cAGC-GCCuGGUgGAGUggucgcguGGCGGGCCuGGCc -3'
miRNA:   3'- -UCGuCGG-CCGgCUCG--------UCGCCCGG-CCG- -5'
23042 5' -66.4 NC_005178.1 + 19862 0.69 0.100139
Target:  5'- gGGgAGCUGGaaaGAGCAGCGGcGauGGCa -3'
miRNA:   3'- -UCgUCGGCCgg-CUCGUCGCC-CggCCG- -5'
23042 5' -66.4 NC_005178.1 + 28297 0.69 0.100139
Target:  5'- aGGCGGCagCGGCCuggauAGCGGCGGcGCC-GCu -3'
miRNA:   3'- -UCGUCG--GCCGGc----UCGUCGCC-CGGcCG- -5'
23042 5' -66.4 NC_005178.1 + 37257 0.68 0.104892
Target:  5'- cGGUAGCgauggcgucaaacuCGGCCuccaGGcGCAGCGGGUCGGa -3'
miRNA:   3'- -UCGUCG--------------GCCGG----CU-CGUCGCCCGGCCg -5'
23042 5' -66.4 NC_005178.1 + 15571 0.68 0.104892
Target:  5'- aAGCuGGCUcacauccugaucgaGGCCGAGCAG-GGGCaccuccaGGCu -3'
miRNA:   3'- -UCG-UCGG--------------CCGGCUCGUCgCCCGg------CCG- -5'
23042 5' -66.4 NC_005178.1 + 27316 0.68 0.108374
Target:  5'- cAGCGcGCCGGCCuacuGAGCuauGCGGacuaugucgcgcaGCgCGGCg -3'
miRNA:   3'- -UCGU-CGGCCGG----CUCGu--CGCC-------------CG-GCCG- -5'
23042 5' -66.4 NC_005178.1 + 23611 0.68 0.108669
Target:  5'- uGGCgaAGCCuG-CGGGCuGCGGGCCaGCg -3'
miRNA:   3'- -UCG--UCGGcCgGCUCGuCGCCCGGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.