miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23042 5' -66.4 NC_005178.1 + 30672 0.67 0.142252
Target:  5'- uGGCGGuuCCGcGCUgGAGCAGCGGGUacacGCg -3'
miRNA:   3'- -UCGUC--GGC-CGG-CUCGUCGCCCGgc--CG- -5'
23042 5' -66.4 NC_005178.1 + 34917 0.67 0.138507
Target:  5'- aGGCGuCCGGUCGGGCggaauccagcccGGUGGuGgCGGCg -3'
miRNA:   3'- -UCGUcGGCCGGCUCG------------UCGCC-CgGCCG- -5'
23042 5' -66.4 NC_005178.1 + 16898 0.67 0.134132
Target:  5'- gAGCGGCgcgaccaggcuauCGGCCuGGUuuuGCauguccuGGGCCGGCa -3'
miRNA:   3'- -UCGUCG-------------GCCGGcUCGu--CG-------CCCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 9081 0.67 0.131286
Target:  5'- aGGUcgaAGCCGGCaacGGC-GCGGaGUCGGCu -3'
miRNA:   3'- -UCG---UCGGCCGgc-UCGuCGCC-CGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 5002 0.67 0.131286
Target:  5'- cAGCGGgCGGCCGcuGGCggccaguuccucGGCGaucuGGUCGGCc -3'
miRNA:   3'- -UCGUCgGCCGGC--UCG------------UCGC----CCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 36195 0.67 0.127807
Target:  5'- cAGUGGCUGGaCgGAGCugguaGGCGGGauGGCc -3'
miRNA:   3'- -UCGUCGGCC-GgCUCG-----UCGCCCggCCG- -5'
23042 5' -66.4 NC_005178.1 + 7203 0.67 0.124414
Target:  5'- cAGCAGCgCaucgcgacggGGuuGuuCAGCGGcGCCGGCc -3'
miRNA:   3'- -UCGUCG-G----------CCggCucGUCGCC-CGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 28237 0.67 0.124414
Target:  5'- gGGC-GCCGGCCGA--GGCGGauacaGCCgaGGCg -3'
miRNA:   3'- -UCGuCGGCCGGCUcgUCGCC-----CGG--CCG- -5'
23042 5' -66.4 NC_005178.1 + 26183 0.68 0.121104
Target:  5'- cGCGGCggUGGCC--GCuGCGGGCgUGGCg -3'
miRNA:   3'- uCGUCG--GCCGGcuCGuCGCCCG-GCCG- -5'
23042 5' -66.4 NC_005178.1 + 4835 0.68 0.121104
Target:  5'- aGGCGGCCGaaacggauuuGCCGaAGcCGGaCGGGCCGuagaaGCa -3'
miRNA:   3'- -UCGUCGGC----------CGGC-UC-GUC-GCCCGGC-----CG- -5'
23042 5' -66.4 NC_005178.1 + 20881 0.68 0.121104
Target:  5'- cGGCuugaucuGCaUGGCCGAGCAaaccGCGaGGgCGGCc -3'
miRNA:   3'- -UCGu------CG-GCCGGCUCGU----CGC-CCgGCCG- -5'
23042 5' -66.4 NC_005178.1 + 31466 0.68 0.120452
Target:  5'- uGGCGGCCGGCUc-GCugaacauuccguGCGacacGGCCGGCc -3'
miRNA:   3'- -UCGUCGGCCGGcuCGu-----------CGC----CCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 34585 0.68 0.117876
Target:  5'- gGGgAGCUGGCCGGGCgagucggugAGCGGGaaauGCg -3'
miRNA:   3'- -UCgUCGGCCGGCUCG---------UCGCCCggc-CG- -5'
23042 5' -66.4 NC_005178.1 + 11839 0.68 0.117558
Target:  5'- uGCAgGCCGGCCugcGGCGGaacccccauggcuCGGGCCacGGCc -3'
miRNA:   3'- uCGU-CGGCCGGc--UCGUC-------------GCCCGG--CCG- -5'
23042 5' -66.4 NC_005178.1 + 35157 0.68 0.114729
Target:  5'- cGGCAGCuCGGCggCGAGUAGUccGGUCGGg -3'
miRNA:   3'- -UCGUCG-GCCG--GCUCGUCGc-CCGGCCg -5'
23042 5' -66.4 NC_005178.1 + 20547 0.68 0.114729
Target:  5'- gGGCGGCgaccuuCaGCUGGGCGGUGGcGgCGGCg -3'
miRNA:   3'- -UCGUCG------GcCGGCUCGUCGCC-CgGCCG- -5'
23042 5' -66.4 NC_005178.1 + 34735 0.68 0.114729
Target:  5'- -aCGGCUGGCCaGGGUucaGGCuacGGGCgCGGCg -3'
miRNA:   3'- ucGUCGGCCGG-CUCG---UCG---CCCG-GCCG- -5'
23042 5' -66.4 NC_005178.1 + 24395 0.68 0.11166
Target:  5'- aGGCcGCuuugaaCGGCUGGGUcG-GGGCCGGCg -3'
miRNA:   3'- -UCGuCG------GCCGGCUCGuCgCCCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 819 0.68 0.11166
Target:  5'- -aUAGCCGG-CGAGCauuggcgaAGCaGGUCGGCa -3'
miRNA:   3'- ucGUCGGCCgGCUCG--------UCGcCCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 23611 0.68 0.108669
Target:  5'- uGGCgaAGCCuG-CGGGCuGCGGGCCaGCg -3'
miRNA:   3'- -UCG--UCGGcCgGCUCGuCGCCCGGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.