Results 21 - 40 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23042 | 5' | -66.4 | NC_005178.1 | + | 34917 | 0.67 | 0.138507 |
Target: 5'- aGGCGuCCGGUCGGGCggaauccagcccGGUGGuGgCGGCg -3' miRNA: 3'- -UCGUcGGCCGGCUCG------------UCGCC-CgGCCG- -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 2925 | 0.67 | 0.144929 |
Target: 5'- gAGCGuuuCCGGCUGuAGCcgguGCGGGCCaucaucaggucuagGGCg -3' miRNA: 3'- -UCGUc--GGCCGGC-UCGu---CGCCCGG--------------CCG- -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 28237 | 0.67 | 0.124414 |
Target: 5'- gGGC-GCCGGCCGA--GGCGGauacaGCCgaGGCg -3' miRNA: 3'- -UCGuCGGCCGGCUcgUCGCC-----CGG--CCG- -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 36195 | 0.67 | 0.127807 |
Target: 5'- cAGUGGCUGGaCgGAGCugguaGGCGGGauGGCc -3' miRNA: 3'- -UCGUCGGCC-GgCUCG-----UCGCCCggCCG- -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 9081 | 0.67 | 0.131286 |
Target: 5'- aGGUcgaAGCCGGCaacGGC-GCGGaGUCGGCu -3' miRNA: 3'- -UCG---UCGGCCGgc-UCGuCGCC-CGGCCG- -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 29861 | 0.67 | 0.146091 |
Target: 5'- cGCAGCUuGgCGAGCaAGUcGGCCGGg -3' miRNA: 3'- uCGUCGGcCgGCUCG-UCGcCCGGCCg -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 5002 | 0.67 | 0.131286 |
Target: 5'- cAGCGGgCGGCCGcuGGCggccaguuccucGGCGaucuGGUCGGCc -3' miRNA: 3'- -UCGUCgGCCGGC--UCG------------UCGC----CCGGCCG- -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 7203 | 0.67 | 0.124414 |
Target: 5'- cAGCAGCgCaucgcgacggGGuuGuuCAGCGGcGCCGGCc -3' miRNA: 3'- -UCGUCG-G----------CCggCucGUCGCC-CGGCCG- -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 23611 | 0.68 | 0.108669 |
Target: 5'- uGGCgaAGCCuG-CGGGCuGCGGGCCaGCg -3' miRNA: 3'- -UCG--UCGGcCgGCUCGuCGCCCGGcCG- -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 35157 | 0.68 | 0.114729 |
Target: 5'- cGGCAGCuCGGCggCGAGUAGUccGGUCGGg -3' miRNA: 3'- -UCGUCG-GCCG--GCUCGUCGc-CCGGCCg -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 20881 | 0.68 | 0.121104 |
Target: 5'- cGGCuugaucuGCaUGGCCGAGCAaaccGCGaGGgCGGCc -3' miRNA: 3'- -UCGu------CG-GCCGGCUCGU----CGC-CCgGCCG- -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 37257 | 0.68 | 0.104892 |
Target: 5'- cGGUAGCgauggcgucaaacuCGGCCuccaGGcGCAGCGGGUCGGa -3' miRNA: 3'- -UCGUCG--------------GCCGG----CU-CGUCGCCCGGCCg -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 33546 | 0.68 | 0.108669 |
Target: 5'- cAGUAGCCcuGUCGAGUGGUccaGGUCGGCa -3' miRNA: 3'- -UCGUCGGc-CGGCUCGUCGc--CCGGCCG- -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 24395 | 0.68 | 0.11166 |
Target: 5'- aGGCcGCuuugaaCGGCUGGGUcG-GGGCCGGCg -3' miRNA: 3'- -UCGuCG------GCCGGCUCGuCgCCCGGCCG- -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 11839 | 0.68 | 0.117558 |
Target: 5'- uGCAgGCCGGCCugcGGCGGaacccccauggcuCGGGCCacGGCc -3' miRNA: 3'- uCGU-CGGCCGGc--UCGUC-------------GCCCGG--CCG- -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 819 | 0.68 | 0.11166 |
Target: 5'- -aUAGCCGG-CGAGCauuggcgaAGCaGGUCGGCa -3' miRNA: 3'- ucGUCGGCCgGCUCG--------UCGcCCGGCCG- -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 15571 | 0.68 | 0.104892 |
Target: 5'- aAGCuGGCUcacauccugaucgaGGCCGAGCAG-GGGCaccuccaGGCu -3' miRNA: 3'- -UCG-UCGG--------------CCGGCUCGUCgCCCGg------CCG- -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 27316 | 0.68 | 0.108374 |
Target: 5'- cAGCGcGCCGGCCuacuGAGCuauGCGGacuaugucgcgcaGCgCGGCg -3' miRNA: 3'- -UCGU-CGGCCGG----CUCGu--CGCC-------------CG-GCCG- -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 26183 | 0.68 | 0.121104 |
Target: 5'- cGCGGCggUGGCC--GCuGCGGGCgUGGCg -3' miRNA: 3'- uCGUCG--GCCGGcuCGuCGCCCG-GCCG- -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 31466 | 0.68 | 0.120452 |
Target: 5'- uGGCGGCCGGCUc-GCugaacauuccguGCGacacGGCCGGCc -3' miRNA: 3'- -UCGUCGGCCGGcuCGu-----------CGC----CCGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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