Results 41 - 60 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23042 | 5' | -66.4 | NC_005178.1 | + | 33546 | 0.68 | 0.108669 |
Target: 5'- cAGUAGCCcuGUCGAGUGGUccaGGUCGGCa -3' miRNA: 3'- -UCGUCGGc-CGGCUCGUCGc--CCGGCCG- -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 23611 | 0.68 | 0.108669 |
Target: 5'- uGGCgaAGCCuG-CGGGCuGCGGGCCaGCg -3' miRNA: 3'- -UCG--UCGGcCgGCUCGuCGCCCGGcCG- -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 27316 | 0.68 | 0.108374 |
Target: 5'- cAGCGcGCCGGCCuacuGAGCuauGCGGacuaugucgcgcaGCgCGGCg -3' miRNA: 3'- -UCGU-CGGCCGG----CUCGu--CGCC-------------CG-GCCG- -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 15571 | 0.68 | 0.104892 |
Target: 5'- aAGCuGGCUcacauccugaucgaGGCCGAGCAG-GGGCaccuccaGGCu -3' miRNA: 3'- -UCG-UCGG--------------CCGGCUCGUCgCCCGg------CCG- -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 37257 | 0.68 | 0.104892 |
Target: 5'- cGGUAGCgauggcgucaaacuCGGCCuccaGGcGCAGCGGGUCGGa -3' miRNA: 3'- -UCGUCG--------------GCCGG----CU-CGUCGCCCGGCCg -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 28297 | 0.69 | 0.100139 |
Target: 5'- aGGCGGCagCGGCCuggauAGCGGCGGcGCC-GCu -3' miRNA: 3'- -UCGUCG--GCCGGc----UCGUCGCC-CGGcCG- -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 19862 | 0.69 | 0.100139 |
Target: 5'- gGGgAGCUGGaaaGAGCAGCGGcGauGGCa -3' miRNA: 3'- -UCgUCGGCCgg-CUCGUCGCC-CggCCG- -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 30795 | 0.69 | 0.094807 |
Target: 5'- uGGCAG-CGGUC--GCGGCcucgaccuGGGCCGGCg -3' miRNA: 3'- -UCGUCgGCCGGcuCGUCG--------CCCGGCCG- -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 12083 | 0.69 | 0.094807 |
Target: 5'- cAGC-GCCuGGUgGAGUggucgcguGGCGGGCCuGGCc -3' miRNA: 3'- -UCGuCGG-CCGgCUCG--------UCGCCCGG-CCG- -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 31940 | 0.69 | 0.092243 |
Target: 5'- cGGCA-UgGGCCGAGCcgAGCGG-UCGGCg -3' miRNA: 3'- -UCGUcGgCCGGCUCG--UCGCCcGGCCG- -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 10292 | 0.69 | 0.089745 |
Target: 5'- gAGCAGCuCGGCgGcacguccuGGCGGauagccgaGGGCCGGg -3' miRNA: 3'- -UCGUCG-GCCGgC--------UCGUCg-------CCCGGCCg -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 23470 | 0.69 | 0.087311 |
Target: 5'- cGGCgcgaAGCCGGCCc-GCuGCucGGCCGGCu -3' miRNA: 3'- -UCG----UCGGCCGGcuCGuCGc-CCGGCCG- -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 33345 | 0.7 | 0.08494 |
Target: 5'- aGGCGGUCGGCuUGGGCuucuGCGGcuUCGGCg -3' miRNA: 3'- -UCGUCGGCCG-GCUCGu---CGCCc-GGCCG- -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 2764 | 0.7 | 0.082403 |
Target: 5'- cAGCAGCgCGGCgCGGGUuuccuucGGCaGGGCCGa- -3' miRNA: 3'- -UCGUCG-GCCG-GCUCG-------UCG-CCCGGCcg -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 18184 | 0.7 | 0.080382 |
Target: 5'- uGGCGGuUCGGCUGcGCGGUggcgucuauGGGCCGGg -3' miRNA: 3'- -UCGUC-GGCCGGCuCGUCG---------CCCGGCCg -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 12657 | 0.7 | 0.080382 |
Target: 5'- cGGCGGCCGGCgCGcuGGCGG-GuGGCCuGGUu -3' miRNA: 3'- -UCGUCGGCCG-GC--UCGUCgC-CCGG-CCG- -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 33895 | 0.7 | 0.078191 |
Target: 5'- gGGCGuccuGCCGcGCCuGGCGGCGaugcucggcGGCCGGUg -3' miRNA: 3'- -UCGU----CGGC-CGGcUCGUCGC---------CCGGCCG- -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 16883 | 0.7 | 0.078191 |
Target: 5'- aGGUAGCgaGGCCGAGCugcucGGCGcccuGGCCgaGGCa -3' miRNA: 3'- -UCGUCGg-CCGGCUCG-----UCGC----CCGG--CCG- -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 20470 | 0.7 | 0.077975 |
Target: 5'- cGCAGCuUGGCCagguuggucgccuGGGCGuccaGGGCCGGCu -3' miRNA: 3'- uCGUCG-GCCGG-------------CUCGUcg--CCCGGCCG- -5' |
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23042 | 5' | -66.4 | NC_005178.1 | + | 10350 | 0.7 | 0.076904 |
Target: 5'- aGGaCGuGCC-GCCGAGCugcucgacuaccaccAGCGuGGCCGGCa -3' miRNA: 3'- -UC-GU-CGGcCGGCUCG---------------UCGC-CCGGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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