miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23042 5' -66.4 NC_005178.1 + 37508 0.75 0.029268
Target:  5'- gAGCAGCuCGGCCGAuuccuGCGGgaGGGCauCGGCa -3'
miRNA:   3'- -UCGUCG-GCCGGCU-----CGUCg-CCCG--GCCG- -5'
23042 5' -66.4 NC_005178.1 + 37257 0.68 0.104892
Target:  5'- cGGUAGCgauggcgucaaacuCGGCCuccaGGcGCAGCGGGUCGGa -3'
miRNA:   3'- -UCGUCG--------------GCCGG----CU-CGUCGCCCGGCCg -5'
23042 5' -66.4 NC_005178.1 + 36195 0.67 0.127807
Target:  5'- cAGUGGCUGGaCgGAGCugguaGGCGGGauGGCc -3'
miRNA:   3'- -UCGUCGGCC-GgCUCG-----UCGCCCggCCG- -5'
23042 5' -66.4 NC_005178.1 + 35232 0.72 0.054295
Target:  5'- uGCGGCCuGGCCGA-CAGUGacguccuccagccGGCUGGCg -3'
miRNA:   3'- uCGUCGG-CCGGCUcGUCGC-------------CCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 35157 0.68 0.114729
Target:  5'- cGGCAGCuCGGCggCGAGUAGUccGGUCGGg -3'
miRNA:   3'- -UCGUCG-GCCG--GCUCGUCGc-CCGGCCg -5'
23042 5' -66.4 NC_005178.1 + 34917 0.67 0.138507
Target:  5'- aGGCGuCCGGUCGGGCggaauccagcccGGUGGuGgCGGCg -3'
miRNA:   3'- -UCGUcGGCCGGCUCG------------UCGCC-CgGCCG- -5'
23042 5' -66.4 NC_005178.1 + 34735 0.68 0.114729
Target:  5'- -aCGGCUGGCCaGGGUucaGGCuacGGGCgCGGCg -3'
miRNA:   3'- ucGUCGGCCGG-CUCG---UCG---CCCG-GCCG- -5'
23042 5' -66.4 NC_005178.1 + 34585 0.68 0.117876
Target:  5'- gGGgAGCUGGCCGGGCgagucggugAGCGGGaaauGCg -3'
miRNA:   3'- -UCgUCGGCCGGCUCG---------UCGCCCggc-CG- -5'
23042 5' -66.4 NC_005178.1 + 33895 0.7 0.078191
Target:  5'- gGGCGuccuGCCGcGCCuGGCGGCGaugcucggcGGCCGGUg -3'
miRNA:   3'- -UCGU----CGGC-CGGcUCGUCGC---------CCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 33546 0.68 0.108669
Target:  5'- cAGUAGCCcuGUCGAGUGGUccaGGUCGGCa -3'
miRNA:   3'- -UCGUCGGc-CGGCUCGUCGc--CCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 33345 0.7 0.08494
Target:  5'- aGGCGGUCGGCuUGGGCuucuGCGGcuUCGGCg -3'
miRNA:   3'- -UCGUCGGCCG-GCUCGu---CGCCc-GGCCG- -5'
23042 5' -66.4 NC_005178.1 + 32898 0.7 0.071757
Target:  5'- cAGCGGCUGGgUGAucucCAGCGGcguggucGCCGGCa -3'
miRNA:   3'- -UCGUCGGCCgGCUc---GUCGCC-------CGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 31940 0.69 0.092243
Target:  5'- cGGCA-UgGGCCGAGCcgAGCGG-UCGGCg -3'
miRNA:   3'- -UCGUcGgCCGGCUCG--UCGCCcGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 31666 0.66 0.17116
Target:  5'- aGGUGGCCuGGaCgGGGCGGaccagguccaGGCCGGCg -3'
miRNA:   3'- -UCGUCGG-CC-GgCUCGUCgc--------CCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 31551 0.71 0.067502
Target:  5'- aAGUcgaGGCCGGCCGuGUcgcacggaauguucAGCGaGCCGGCc -3'
miRNA:   3'- -UCG---UCGGCCGGCuCG--------------UCGCcCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 31466 0.68 0.120452
Target:  5'- uGGCGGCCGGCUc-GCugaacauuccguGCGacacGGCCGGCc -3'
miRNA:   3'- -UCGUCGGCCGGcuCGu-----------CGC----CCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 30795 0.69 0.094807
Target:  5'- uGGCAG-CGGUC--GCGGCcucgaccuGGGCCGGCg -3'
miRNA:   3'- -UCGUCgGCCGGcuCGUCG--------CCCGGCCG- -5'
23042 5' -66.4 NC_005178.1 + 30672 0.67 0.142252
Target:  5'- uGGCGGuuCCGcGCUgGAGCAGCGGGUacacGCg -3'
miRNA:   3'- -UCGUC--GGC-CGG-CUCGUCGCCCGgc--CG- -5'
23042 5' -66.4 NC_005178.1 + 29861 0.67 0.146091
Target:  5'- cGCAGCUuGgCGAGCaAGUcGGCCGGg -3'
miRNA:   3'- uCGUCGGcCgGCUCG-UCGcCCGGCCg -5'
23042 5' -66.4 NC_005178.1 + 28706 0.71 0.068068
Target:  5'- -cCAGauggCGGCCGA-CAuGUGGGCCGGCa -3'
miRNA:   3'- ucGUCg---GCCGGCUcGU-CGCCCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.