miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23043 5' -50.9 NC_005178.1 + 37277 0.66 0.774047
Target:  5'- uGUCa--GGUCCGGCGCUg--UGCCGGu -3'
miRNA:   3'- -UAGaacUUAGGUCGCGGuaaACGGCU- -5'
23043 5' -50.9 NC_005178.1 + 35473 0.67 0.76311
Target:  5'- uGUCggUGGcggCCAGCGCCGgg-GCCa- -3'
miRNA:   3'- -UAGa-ACUua-GGUCGCGGUaaaCGGcu -5'
23043 5' -50.9 NC_005178.1 + 33575 0.66 0.795395
Target:  5'- -gCUUGAAgaacUCCcGCGCC---UGCCGGu -3'
miRNA:   3'- uaGAACUU----AGGuCGCGGuaaACGGCU- -5'
23043 5' -50.9 NC_005178.1 + 29305 0.68 0.659353
Target:  5'- ---aUGAAgCCGGCGCCg---GCCGAc -3'
miRNA:   3'- uagaACUUaGGUCGCGGuaaaCGGCU- -5'
23043 5' -50.9 NC_005178.1 + 23990 1.08 0.001685
Target:  5'- cAUCUUGAAUCCAGCGCCAUUUGCCGAg -3'
miRNA:   3'- -UAGAACUUAGGUCGCGGUAAACGGCU- -5'
23043 5' -50.9 NC_005178.1 + 21949 0.73 0.381418
Target:  5'- cGUCU----UCCAGCGCCGg--GCCGAc -3'
miRNA:   3'- -UAGAacuuAGGUCGCGGUaaaCGGCU- -5'
23043 5' -50.9 NC_005178.1 + 19894 0.68 0.706363
Target:  5'- -aCUUGAAUCCAgGCGC----UGCCGu -3'
miRNA:   3'- uaGAACUUAGGU-CGCGguaaACGGCu -5'
23043 5' -50.9 NC_005178.1 + 19757 0.66 0.825895
Target:  5'- -aCUgcgGAaaccGUCCGGCGCCAUcuucugGCCa- -3'
miRNA:   3'- uaGAa--CU----UAGGUCGCGGUAaa----CGGcu -5'
23043 5' -50.9 NC_005178.1 + 17626 0.71 0.496012
Target:  5'- gGUCUgacggucGAGUCCAGCGCCGgcaagaccgGCCa- -3'
miRNA:   3'- -UAGAa------CUUAGGUCGCGGUaaa------CGGcu -5'
23043 5' -50.9 NC_005178.1 + 17061 0.66 0.825895
Target:  5'- aGUCgauccGAUCCAGCguGCCGUUgaGCCGGc -3'
miRNA:   3'- -UAGaac--UUAGGUCG--CGGUAAa-CGGCU- -5'
23043 5' -50.9 NC_005178.1 + 12220 0.67 0.756471
Target:  5'- cUCUUu--UCCAGCGCCuggccaagcggGCCGAc -3'
miRNA:   3'- uAGAAcuuAGGUCGCGGuaaa-------CGGCU- -5'
23043 5' -50.9 NC_005178.1 + 7770 0.66 0.805778
Target:  5'- ----gGAGUCCAGUccuggugcgagGCCAaccgUGCCGAg -3'
miRNA:   3'- uagaaCUUAGGUCG-----------CGGUaa--ACGGCU- -5'
23043 5' -50.9 NC_005178.1 + 5020 0.67 0.752016
Target:  5'- gAUCUguacGAGUCCAGCcaaGCCuccaucUUGCUGAu -3'
miRNA:   3'- -UAGAa---CUUAGGUCG---CGGua----AACGGCU- -5'
23043 5' -50.9 NC_005178.1 + 1840 0.67 0.717939
Target:  5'- -gCUUGAGUUCAcGUGCC---UGCCGGc -3'
miRNA:   3'- uaGAACUUAGGU-CGCGGuaaACGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.