Results 21 - 40 of 56 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23044 | 3' | -62.4 | NC_005178.1 | + | 16201 | 0.66 | 0.259043 |
Target: 5'- cGGUGACCGGCcucgGCcauGCCGCag-CGGgCAu -3' miRNA: 3'- -CUACUGGCCG----CG---CGGCGgaaGCCgGU- -5' |
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23044 | 3' | -62.4 | NC_005178.1 | + | 16899 | 0.67 | 0.216447 |
Target: 5'- --gGAgCGGCGCGaCCagGCUaUCGGCCu -3' miRNA: 3'- cuaCUgGCCGCGC-GG--CGGaAGCCGGu -5' |
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23044 | 3' | -62.4 | NC_005178.1 | + | 17406 | 0.73 | 0.088092 |
Target: 5'- cAUGGCCgGGCGCuauGCCGCCgcauacgaGGCCAg -3' miRNA: 3'- cUACUGG-CCGCG---CGGCGGaag-----CCGGU- -5' |
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23044 | 3' | -62.4 | NC_005178.1 | + | 17406 | 0.67 | 0.231523 |
Target: 5'- ---aGCCGGCGCggGCUGCCgagcugggcgaccUCGGCCc -3' miRNA: 3'- cuacUGGCCGCG--CGGCGGa------------AGCCGGu -5' |
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23044 | 3' | -62.4 | NC_005178.1 | + | 17834 | 0.68 | 0.181921 |
Target: 5'- --aGGCCGaGCGCacccugggagcgccuGCCGCCcUCGGCgAg -3' miRNA: 3'- cuaCUGGC-CGCG---------------CGGCGGaAGCCGgU- -5' |
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23044 | 3' | -62.4 | NC_005178.1 | + | 18663 | 0.67 | 0.22272 |
Target: 5'- aGGUGAcuaucCCGGCGCGCCcguaCCUcccgguccucagaaaCGGCCAg -3' miRNA: 3'- -CUACU-----GGCCGCGCGGc---GGAa--------------GCCGGU- -5' |
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23044 | 3' | -62.4 | NC_005178.1 | + | 18734 | 0.67 | 0.210876 |
Target: 5'- --gGACCgggagguacgGGCGCGCCGggauagucaCCUUaCGGCCu -3' miRNA: 3'- cuaCUGG----------CCGCGCGGC---------GGAA-GCCGGu -5' |
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23044 | 3' | -62.4 | NC_005178.1 | + | 21012 | 0.66 | 0.265658 |
Target: 5'- cGUGGgCGGCaGCaCCGCCacCGGCCu -3' miRNA: 3'- cUACUgGCCG-CGcGGCGGaaGCCGGu -5' |
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23044 | 3' | -62.4 | NC_005178.1 | + | 21071 | 0.68 | 0.200105 |
Target: 5'- cGGUGG-CGGUGCuGCCGCCcaCGGCgAa -3' miRNA: 3'- -CUACUgGCCGCG-CGGCGGaaGCCGgU- -5' |
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23044 | 3' | -62.4 | NC_005178.1 | + | 22325 | 0.66 | 0.265658 |
Target: 5'- --cGcCUGGCGgGCCaGCCUggCGGUCGg -3' miRNA: 3'- cuaCuGGCCGCgCGG-CGGAa-GCCGGU- -5' |
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23044 | 3' | -62.4 | NC_005178.1 | + | 23466 | 0.69 | 0.166105 |
Target: 5'- --cGcCCGGCGCGaaGCCggcccgcugcUCGGCCGg -3' miRNA: 3'- cuaCuGGCCGCGCggCGGa---------AGCCGGU- -5' |
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23044 | 3' | -62.4 | NC_005178.1 | + | 23535 | 0.68 | 0.179993 |
Target: 5'- --cGGCCGagcaGCGgGCCGgCUUCGcGCCGg -3' miRNA: 3'- cuaCUGGC----CGCgCGGCgGAAGC-CGGU- -5' |
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23044 | 3' | -62.4 | NC_005178.1 | + | 24173 | 0.66 | 0.265658 |
Target: 5'- uGGUGGCUGGCGaugugauCCGCU--UGGCCAa -3' miRNA: 3'- -CUACUGGCCGCgc-----GGCGGaaGCCGGU- -5' |
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23044 | 3' | -62.4 | NC_005178.1 | + | 24503 | 1.08 | 0.000141 |
Target: 5'- cGAUGACCGGCGCGCCGCCUUCGGCCAg -3' miRNA: 3'- -CUACUGGCCGCGCGGCGGAAGCCGGU- -5' |
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23044 | 3' | -62.4 | NC_005178.1 | + | 24582 | 0.7 | 0.145088 |
Target: 5'- gGAU-ACCGGCGaccuggGCCG-CUUCGGCCGc -3' miRNA: 3'- -CUAcUGGCCGCg-----CGGCgGAAGCCGGU- -5' |
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23044 | 3' | -62.4 | NC_005178.1 | + | 26094 | 0.68 | 0.179993 |
Target: 5'- --gGGgCGGaCGCuGCCGCagcgUCGGCCAa -3' miRNA: 3'- cuaCUgGCC-GCG-CGGCGga--AGCCGGU- -5' |
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23044 | 3' | -62.4 | NC_005178.1 | + | 26824 | 0.72 | 0.101348 |
Target: 5'- uGUGGCCaGCgGgGCUGUCUUCGGCCc -3' miRNA: 3'- cUACUGGcCG-CgCGGCGGAAGCCGGu -5' |
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23044 | 3' | -62.4 | NC_005178.1 | + | 27142 | 0.66 | 0.286326 |
Target: 5'- --cGGCCGGaaaauauCGCCGCCgcucgcaaGGCCAu -3' miRNA: 3'- cuaCUGGCCgc-----GCGGCGGaag-----CCGGU- -5' |
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23044 | 3' | -62.4 | NC_005178.1 | + | 27366 | 0.72 | 0.095834 |
Target: 5'- --aGGCCGGCGCGCugcugCGCCUggagcuucugcUCGGCg- -3' miRNA: 3'- cuaCUGGCCGCGCG-----GCGGA-----------AGCCGgu -5' |
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23044 | 3' | -62.4 | NC_005178.1 | + | 28133 | 0.67 | 0.227967 |
Target: 5'- ---aGCUGGCGgGUCGCCaUCcuGGCCAg -3' miRNA: 3'- cuacUGGCCGCgCGGCGGaAG--CCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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