miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23044 3' -62.4 NC_005178.1 + 2905 0.67 0.227967
Target:  5'- --gGACaUGGCGCGCCucgGCCaggUCGaGCCGc -3'
miRNA:   3'- cuaCUG-GCCGCGCGG---CGGa--AGC-CGGU- -5'
23044 3' -62.4 NC_005178.1 + 3808 0.75 0.054339
Target:  5'- cGAUGGcCCGGCGCGUCaGCUUgaaggUGGCCAg -3'
miRNA:   3'- -CUACU-GGCCGCGCGG-CGGAa----GCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 3916 0.66 0.286326
Target:  5'- cGAUG-CgCGGCaaGCUGCUgugCGGCCGg -3'
miRNA:   3'- -CUACuG-GCCGcgCGGCGGaa-GCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 4574 0.75 0.062692
Target:  5'- --aGGCCGGaGCGuuGCCgcUCGGCCAg -3'
miRNA:   3'- cuaCUGGCCgCGCggCGGa-AGCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 5009 0.73 0.076496
Target:  5'- cGAUGAUCagcgGGCG-GCCGCUggCGGCCAg -3'
miRNA:   3'- -CUACUGG----CCGCgCGGCGGaaGCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 5295 0.66 0.259043
Target:  5'- --gGGCCGGCGCGa-GCUggaacUGGCCGa -3'
miRNA:   3'- cuaCUGGCCGCGCggCGGaa---GCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 7413 0.69 0.166105
Target:  5'- uGAUGGgcuuCCaGCGCGaCGCC-UCGGCCGg -3'
miRNA:   3'- -CUACU----GGcCGCGCgGCGGaAGCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 7880 0.7 0.137382
Target:  5'- cGUGACUGuGCGCGgCGCCgaugCGGUCc -3'
miRNA:   3'- cUACUGGC-CGCGCgGCGGaa--GCCGGu -5'
23044 3' -62.4 NC_005178.1 + 9521 0.66 0.252562
Target:  5'- --aGACCGccaGCGCCGCCUggcgCGggaacGCCAa -3'
miRNA:   3'- cuaCUGGCcg-CGCGGCGGAa---GC-----CGGU- -5'
23044 3' -62.4 NC_005178.1 + 9661 0.66 0.286326
Target:  5'- --cGGCCGGUG-GCuuCGCCgagcCGGCCGa -3'
miRNA:   3'- cuaCUGGCCGCgCG--GCGGaa--GCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 9723 0.67 0.216447
Target:  5'- --cGGCCGGCucgGCGaaGCCacCGGCCGc -3'
miRNA:   3'- cuaCUGGCCG---CGCggCGGaaGCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 10249 0.68 0.200105
Target:  5'- cAUGGCCGGaCGCauCgGCCUgcCGGCCAc -3'
miRNA:   3'- cUACUGGCC-GCGc-GgCGGAa-GCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 10636 0.66 0.246216
Target:  5'- ---aGCCGGgGCGCaaCGCCc-CGGCCGg -3'
miRNA:   3'- cuacUGGCCgCGCG--GCGGaaGCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 10941 0.66 0.265658
Target:  5'- --cGAuCCGGCGCGgcCCGCCUcCuGCCc -3'
miRNA:   3'- cuaCU-GGCCGCGC--GGCGGAaGcCGGu -5'
23044 3' -62.4 NC_005178.1 + 11100 0.68 0.179993
Target:  5'- --cGGCCGGCaGCGCCGCgCUgcugaaaauguUUGGCa- -3'
miRNA:   3'- cuaCUGGCCG-CGCGGCG-GA-----------AGCCGgu -5'
23044 3' -62.4 NC_005178.1 + 12119 0.75 0.062692
Target:  5'- --cGAUgGGCGCGCCGCCUgc-GCCGa -3'
miRNA:   3'- cuaCUGgCCGCGCGGCGGAagcCGGU- -5'
23044 3' -62.4 NC_005178.1 + 12172 0.66 0.265658
Target:  5'- --aGG-CGGCGCGCC-Ca-UCGGCCAg -3'
miRNA:   3'- cuaCUgGCCGCGCGGcGgaAGCCGGU- -5'
23044 3' -62.4 NC_005178.1 + 12660 0.75 0.055918
Target:  5'- --cGGCCGGCGCGCUGgCgggUGGCCu -3'
miRNA:   3'- cuaCUGGCCGCGCGGCgGaa-GCCGGu -5'
23044 3' -62.4 NC_005178.1 + 12791 0.67 0.209229
Target:  5'- --cGACCGGCagucccuggaggucGCgGCCGCCaugUUCGGCg- -3'
miRNA:   3'- cuaCUGGCCG--------------CG-CGGCGG---AAGCCGgu -5'
23044 3' -62.4 NC_005178.1 + 12935 0.66 0.27241
Target:  5'- --gGACgUGGCGCGCCagguGCUggcCGGCCu -3'
miRNA:   3'- cuaCUG-GCCGCGCGG----CGGaa-GCCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.